Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 BX664725.1-201ENST00000438252 379 ntBASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC28BQ9BUN5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 AL031602.1-201ENST00000633169 911 ntBASIC20.83■□□□□ 0.93
CCDC28BQ9BUN5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CCDC28BQ9BUN5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 AC026471.6-201ENST00000622954 1905 ntBASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28BQ9BUN5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 AC092028.1-203ENST00000608262 953 ntBASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28BQ9BUN5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC28BQ9BUN5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 AC012354.3-201ENST00000623734 483 ntBASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28BQ9BUN5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms