Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 AP003097.1-201ENST00000530657 1135 ntBASIC21.5■■□□□ 1.03
VPS13AQ96RL7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 Z99916.2-201ENST00000604037 246 ntBASIC21.5■■□□□ 1.03
VPS13AQ96RL7 LINC00543-201ENST00000567234 1845 ntBASIC21.5■■□□□ 1.03
VPS13AQ96RL7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS13AQ96RL7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS13AQ96RL7 AC009237.3-201ENST00000393279 1427 ntBASIC21.49■■□□□ 1.03
VPS13AQ96RL7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 MIR718-201ENST00000390190 70 ntBASIC21.48■■□□□ 1.03
VPS13AQ96RL7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS13AQ96RL7 AC004812.2-201ENST00000611079 2094 ntBASIC21.47■■□□□ 1.03
VPS13AQ96RL7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 UBE2SP1-201ENST00000450587 669 ntBASIC21.47■■□□□ 1.03
VPS13AQ96RL7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS13AQ96RL7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS13AQ96RL7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.45■■□□□ 1.02
VPS13AQ96RL7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms