Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
UBE3DQ7Z6J8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.41■□□□□ 0.86
UBE3DQ7Z6J8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 FBXW4P1-201ENST00000426721 2239 ntBASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 AC012414.1-201ENST00000556676 535 ntBASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 AL034346.1-201ENST00000568244 1277 ntBASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
UBE3DQ7Z6J8 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.39■□□□□ 0.86
UBE3DQ7Z6J8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
UBE3DQ7Z6J8 IRS3P-201ENST00000223076 1006 ntBASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
UBE3DQ7Z6J8 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
UBE3DQ7Z6J8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 ZNRF2P3-201ENST00000424200 374 ntBASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 BX005040.4-201ENST00000637145 1518 ntBASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UBE3DQ7Z6J8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms