Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC29.42■■■□□ 2.3
KRT28Q7Z3Y7 EEF1DP3-203ENST00000566025 782 ntBASIC29.42■■■□□ 2.3
KRT28Q7Z3Y7 AP006294.2-201ENST00000641667 209 ntBASIC29.42■■■□□ 2.3
KRT28Q7Z3Y7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
KRT28Q7Z3Y7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
KRT28Q7Z3Y7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 MYC-209ENST00000641252 345 ntBASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
KRT28Q7Z3Y7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
KRT28Q7Z3Y7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 ABCB10P4-201ENST00000566803 2184 ntBASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 AC008694.1-202ENST00000636953 945 ntBASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
KRT28Q7Z3Y7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.29
KRT28Q7Z3Y7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 AC069236.1-201ENST00000604339 616 ntBASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.38■■■□□ 2.29
KRT28Q7Z3Y7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 AL596275.1-201ENST00000423464 877 ntBASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KRT28Q7Z3Y7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 AC097658.1-201ENST00000475555 843 ntBASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 AC053503.5-201ENST00000601508 636 ntBASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT28Q7Z3Y7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT28Q7Z3Y7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 AL158047.1-201ENST00000445918 881 ntBASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
KRT28Q7Z3Y7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC29.33■■■□□ 2.29
KRT28Q7Z3Y7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC29.33■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms