Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC12□□□□□ -0.49
UBR4Q5T4S7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
UBR4Q5T4S7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC12□□□□□ -0.49
UBR4Q5T4S7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC12□□□□□ -0.49
UBR4Q5T4S7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12□□□□□ -0.49
UBR4Q5T4S7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
UBR4Q5T4S7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 AL049637.2-201ENST00000641778 930 ntBASIC11.99□□□□□ -0.49
UBR4Q5T4S7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 HES2-206ENST00000489730 730 ntTSL 2 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
UBR4Q5T4S7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 HMGN1P19-201ENST00000436976 333 ntBASIC11.98□□□□□ -0.49
UBR4Q5T4S7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
UBR4Q5T4S7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 Six3os1_6.1-201ENST00000620790 196 ntBASIC11.97□□□□□ -0.49
UBR4Q5T4S7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
UBR4Q5T4S7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms