Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRIF1Q5T3J3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LRIF1Q5T3J3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRIF1Q5T3J3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 AC010141.3-201ENST00000456659 717 ntBASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 MIR3621-201ENST00000580529 85 ntBASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 AL356740.2-201ENST00000601559 647 ntBASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 AC087239.1-201ENST00000622671 572 ntBASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRIF1Q5T3J3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRIF1Q5T3J3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
LRIF1Q5T3J3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 OXCT2P1-201ENST00000447263 1535 ntBASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.2■□□□□ 0.82
LRIF1Q5T3J3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRIF1Q5T3J3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms