Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 AL596275.1-201ENST00000423464 877 ntBASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.56■■□□□ 1.84
CCDC88AQ3V6T2 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 MIR4758-201ENST00000577688 71 ntBASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC88AQ3V6T2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 AL158047.1-201ENST00000445918 881 ntBASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CCDC88AQ3V6T2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 AC138907.5-202ENST00000569484 235 ntBASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 AC016405.3-201ENST00000607710 860 ntBASIC26.53■■□□□ 1.84
CCDC88AQ3V6T2 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC26.52■■□□□ 1.84
CCDC88AQ3V6T2 ANOS2P-203ENST00000472227 1816 ntBASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 AC010141.2-201ENST00000452426 721 ntBASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 AP001160.3-201ENST00000601484 763 ntBASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC88AQ3V6T2 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.5■■□□□ 1.83
CCDC88AQ3V6T2 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CCDC88AQ3V6T2 AP006294.2-201ENST00000641667 209 ntBASIC26.5■■□□□ 1.83
CCDC88AQ3V6T2 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 MYC-209ENST00000641252 345 ntBASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC26.49■■□□□ 1.83
CCDC88AQ3V6T2 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC26.48■■□□□ 1.83
CCDC88AQ3V6T2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 MIPEPP3-201ENST00000412105 444 ntBASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 BX276092.2-201ENST00000417668 665 ntBASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms