Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA3P55318 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
FOXA3P55318 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA3P55318 AF131216.4-201ENST00000638924 1588 ntBASIC16.06■□□□□ 0.16
FOXA3P55318 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA3P55318 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA3P55318 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 AC138932.1-201ENST00000534164 6830 ntBASIC16.06■□□□□ 0.16
FOXA3P55318 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA3P55318 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
FOXA3P55318 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
FOXA3P55318 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXA3P55318 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.05■□□□□ 0.16
FOXA3P55318 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA3P55318 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 AC019171.1-201ENST00000601251 1056 ntBASIC16.05■□□□□ 0.16
FOXA3P55318 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.05■□□□□ 0.16
FOXA3P55318 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
FOXA3P55318 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA3P55318 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
FOXA3P55318 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
FOXA3P55318 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA3P55318 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA3P55318 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
FOXA3P55318 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA3P55318 MIR7108-201ENST00000614319 87 ntBASIC16.04■□□□□ 0.16
FOXA3P55318 AC009086.3-201ENST00000623486 1008 ntBASIC16.04■□□□□ 0.16
FOXA3P55318 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA3P55318 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA3P55318 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
FOXA3P55318 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA3P55318 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
FOXA3P55318 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
FOXA3P55318 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 DUX4L9-201ENST00000449051 1259 ntBASIC16.03■□□□□ 0.16
FOXA3P55318 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 PVT1-219ENST00000523427 938 ntTSL 3 BASIC16.03■□□□□ 0.16
FOXA3P55318 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA3P55318 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 LINC01006-201ENST00000333319 2292 ntBASIC16.03■□□□□ 0.16
FOXA3P55318 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
FOXA3P55318 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA3P55318 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA3P55318 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA3P55318 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
FOXA3P55318 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.02■□□□□ 0.15
FOXA3P55318 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA3P55318 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA3P55318 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
FOXA3P55318 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA3P55318 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms