Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.3■■□□□ 1
LIMK1P53667 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
LIMK1P53667 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
LIMK1P53667 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.3■■□□□ 1
LIMK1P53667 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIMK1P53667 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.29■■□□□ 1
LIMK1P53667 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.29■■□□□ 1
LIMK1P53667 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 AL596275.1-201ENST00000423464 877 ntBASIC21.29■■□□□ 1
LIMK1P53667 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LIMK1P53667 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.29■■□□□ 1
LIMK1P53667 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.29■■□□□ 1
LIMK1P53667 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.29■■□□□ 1
LIMK1P53667 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
LIMK1P53667 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.29■■□□□ 1
LIMK1P53667 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIMK1P53667 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
LIMK1P53667 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
LIMK1P53667 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.28■■□□□ 1
LIMK1P53667 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.28■■□□□ 1
LIMK1P53667 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LIMK1P53667 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
LIMK1P53667 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LIMK1P53667 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.27■■□□□ 1
LIMK1P53667 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.27■■□□□ 1
LIMK1P53667 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
LIMK1P53667 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.27■■□□□ 1
LIMK1P53667 AP001160.3-201ENST00000601484 763 ntBASIC21.27■■□□□ 1
LIMK1P53667 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.27■■□□□ 1
LIMK1P53667 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 AC005224.4-201ENST00000583262 1652 ntBASIC21.27■■□□□ 1
LIMK1P53667 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.27■■□□□ 1
LIMK1P53667 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.27■□□□□ 0.99
LIMK1P53667 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LIMK1P53667 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.27■□□□□ 0.99
LIMK1P53667 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
LIMK1P53667 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.26■□□□□ 0.99
LIMK1P53667 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
LIMK1P53667 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
LIMK1P53667 OXCT2P1-201ENST00000447263 1535 ntBASIC21.26■□□□□ 0.99
LIMK1P53667 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 MIPEPP3-201ENST00000412105 444 ntBASIC21.26■□□□□ 0.99
LIMK1P53667 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 RPS2P4-201ENST00000476944 856 ntBASIC21.26■□□□□ 0.99
LIMK1P53667 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
LIMK1P53667 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.26■□□□□ 0.99
LIMK1P53667 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
LIMK1P53667 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMK1P53667 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.26■□□□□ 0.99
LIMK1P53667 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMK1P53667 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LIMK1P53667 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMK1P53667 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMK1P53667 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
LIMK1P53667 AC009237.3-201ENST00000393279 1427 ntBASIC21.25■□□□□ 0.99
LIMK1P53667 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMK1P53667 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.25■□□□□ 0.99
LIMK1P53667 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMK1P53667 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMK1P53667 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.24■□□□□ 0.99
LIMK1P53667 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMK1P53667 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
LIMK1P53667 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.24■□□□□ 0.99
LIMK1P53667 RARRES2P4-201ENST00000514074 484 ntBASIC21.24■□□□□ 0.99
LIMK1P53667 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LIMK1P53667 AC010536.3-201ENST00000620306 533 ntBASIC21.24■□□□□ 0.99
LIMK1P53667 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.24■□□□□ 0.99
LIMK1P53667 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMK1P53667 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms