Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.27■■□□□ 1.64
SHMT1P34896 TFG-210ENST00000620299 1289 ntTSL 5 BASIC25.27■■□□□ 1.64
SHMT1P34896 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
SHMT1P34896 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
SHMT1P34896 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.27■■□□□ 1.64
SHMT1P34896 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHMT1P34896 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.26■■□□□ 1.63
SHMT1P34896 MAP2K4P1-201ENST00000438453 1195 ntBASIC25.26■■□□□ 1.63
SHMT1P34896 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC25.26■■□□□ 1.63
SHMT1P34896 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.26■■□□□ 1.63
SHMT1P34896 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
SHMT1P34896 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHMT1P34896 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHMT1P34896 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHMT1P34896 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.25■■□□□ 1.63
SHMT1P34896 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SHMT1P34896 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.25■■□□□ 1.63
SHMT1P34896 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.25■■□□□ 1.63
SHMT1P34896 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.25■■□□□ 1.63
SHMT1P34896 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC25.25■■□□□ 1.63
SHMT1P34896 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC25.25■■□□□ 1.63
SHMT1P34896 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHMT1P34896 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SHMT1P34896 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.25■■□□□ 1.63
SHMT1P34896 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.24■■□□□ 1.63
SHMT1P34896 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SHMT1P34896 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.24■■□□□ 1.63
SHMT1P34896 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.24■■□□□ 1.63
SHMT1P34896 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHMT1P34896 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHMT1P34896 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHMT1P34896 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.24■■□□□ 1.63
SHMT1P34896 PARP1-202ENST00000366792 553 ntTSL 3 BASIC25.24■■□□□ 1.63
SHMT1P34896 AC010141.2-201ENST00000452426 721 ntBASIC25.24■■□□□ 1.63
SHMT1P34896 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC25.24■■□□□ 1.63
SHMT1P34896 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
SHMT1P34896 AC138907.5-202ENST00000569484 235 ntBASIC25.24■■□□□ 1.63
SHMT1P34896 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC25.24■■□□□ 1.63
SHMT1P34896 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
SHMT1P34896 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.24■■□□□ 1.63
SHMT1P34896 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.23■■□□□ 1.63
SHMT1P34896 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHMT1P34896 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.23■■□□□ 1.63
SHMT1P34896 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.23■■□□□ 1.63
SHMT1P34896 EEF1DP3-203ENST00000566025 782 ntBASIC25.23■■□□□ 1.63
SHMT1P34896 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.23■■□□□ 1.63
SHMT1P34896 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC25.23■■□□□ 1.63
SHMT1P34896 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHMT1P34896 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHMT1P34896 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHMT1P34896 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.23■■□□□ 1.63
SHMT1P34896 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
SHMT1P34896 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.22■■□□□ 1.63
SHMT1P34896 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 DUX4L16-201ENST00000555130 1264 ntBASIC25.22■■□□□ 1.63
SHMT1P34896 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC25.22■■□□□ 1.63
SHMT1P34896 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.22■■□□□ 1.63
SHMT1P34896 MYCNOS-205ENST00000641950 531 ntBASIC25.22■■□□□ 1.63
SHMT1P34896 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.22■■□□□ 1.63
SHMT1P34896 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHMT1P34896 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
SHMT1P34896 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC25.21■■□□□ 1.63
SHMT1P34896 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.21■■□□□ 1.63
SHMT1P34896 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.21■■□□□ 1.63
SHMT1P34896 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.21■■□□□ 1.63
SHMT1P34896 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.21■■□□□ 1.63
SHMT1P34896 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC25.21■■□□□ 1.63
SHMT1P34896 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHMT1P34896 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.2■■□□□ 1.63
SHMT1P34896 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SHMT1P34896 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.2■■□□□ 1.62
SHMT1P34896 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SHMT1P34896 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHMT1P34896 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC25.2■■□□□ 1.62
SHMT1P34896 MIR663A-201ENST00000385250 93 ntBASIC25.2■■□□□ 1.62
SHMT1P34896 AC006970.2-201ENST00000450065 779 ntBASIC25.2■■□□□ 1.62
SHMT1P34896 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.2■■□□□ 1.62
SHMT1P34896 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.2■■□□□ 1.62
SHMT1P34896 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.2■■□□□ 1.62
SHMT1P34896 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHMT1P34896 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHMT1P34896 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SHMT1P34896 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms