Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.45■■□□□ 1.02
PTPN4P29074 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.45■■□□□ 1.02
PTPN4P29074 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
PTPN4P29074 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN4P29074 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PTPN4P29074 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
PTPN4P29074 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN4P29074 AC009102.2-201ENST00000606772 1639 ntBASIC21.44■■□□□ 1.02
PTPN4P29074 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.44■■□□□ 1.02
PTPN4P29074 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN4P29074 AC099791.2-201ENST00000605725 427 ntBASIC21.44■■□□□ 1.02
PTPN4P29074 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN4P29074 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN4P29074 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
PTPN4P29074 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN4P29074 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN4P29074 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.43■■□□□ 1.02
PTPN4P29074 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN4P29074 RARRES2P6-201ENST00000567333 442 ntBASIC21.43■■□□□ 1.02
PTPN4P29074 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PTPN4P29074 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PTPN4P29074 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN4P29074 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PTPN4P29074 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.43■■□□□ 1.02
PTPN4P29074 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN4P29074 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
PTPN4P29074 SERBP1P1-201ENST00000396021 1160 ntBASIC21.42■■□□□ 1.02
PTPN4P29074 MIR939-201ENST00000401314 82 ntBASIC21.42■■□□□ 1.02
PTPN4P29074 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.42■■□□□ 1.02
PTPN4P29074 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.42■■□□□ 1.02
PTPN4P29074 AP001330.3-201ENST00000520123 633 ntBASIC21.42■■□□□ 1.02
PTPN4P29074 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
PTPN4P29074 AL353803.4-201ENST00000565882 1934 ntBASIC21.42■■□□□ 1.02
PTPN4P29074 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN4P29074 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN4P29074 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN4P29074 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN4P29074 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 AC105265.2-201ENST00000467189 838 ntBASIC21.41■■□□□ 1.02
PTPN4P29074 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
PTPN4P29074 MIR4767-201ENST00000582827 78 ntBASIC21.41■■□□□ 1.02
PTPN4P29074 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN4P29074 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PTPN4P29074 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PTPN4P29074 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.4■■□□□ 1.02
PTPN4P29074 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.4■■□□□ 1.02
PTPN4P29074 AC091305.1-201ENST00000479476 895 ntBASIC21.4■■□□□ 1.02
PTPN4P29074 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.4■■□□□ 1.02
PTPN4P29074 AL138724.1-201ENST00000606771 1088 ntBASIC21.4■■□□□ 1.02
PTPN4P29074 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN4P29074 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN4P29074 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN4P29074 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN4P29074 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PTPN4P29074 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN4P29074 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN4P29074 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PTPN4P29074 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN4P29074 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.39■■□□□ 1.01
PTPN4P29074 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN4P29074 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN4P29074 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN4P29074 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN4P29074 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PTPN4P29074 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN4P29074 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN4P29074 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.38■■□□□ 1.01
PTPN4P29074 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
PTPN4P29074 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN4P29074 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.38■■□□□ 1.01
PTPN4P29074 AC011298.3-201ENST00000615796 283 ntBASIC21.38■■□□□ 1.01
PTPN4P29074 AC241377.3-202ENST00000626088 1088 ntBASIC21.38■■□□□ 1.01
PTPN4P29074 AC241585.3-202ENST00000628937 1088 ntBASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms