Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USF1P22415 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.17■□□□□ 0.5
USF1P22415 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.17■□□□□ 0.5
USF1P22415 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.16■□□□□ 0.5
USF1P22415 AC006970.2-201ENST00000450065 779 ntBASIC18.16■□□□□ 0.5
USF1P22415 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.16■□□□□ 0.5
USF1P22415 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.16■□□□□ 0.5
USF1P22415 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USF1P22415 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
USF1P22415 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USF1P22415 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USF1P22415 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USF1P22415 DUSP8P3-201ENST00000399571 1760 ntBASIC18.15■□□□□ 0.5
USF1P22415 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USF1P22415 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.15■□□□□ 0.5
USF1P22415 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.15■□□□□ 0.5
USF1P22415 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USF1P22415 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USF1P22415 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.15■□□□□ 0.5
USF1P22415 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.15■□□□□ 0.5
USF1P22415 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.15■□□□□ 0.5
USF1P22415 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.15■□□□□ 0.5
USF1P22415 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
USF1P22415 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
USF1P22415 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USF1P22415 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.14■□□□□ 0.49
USF1P22415 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.14■□□□□ 0.49
USF1P22415 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.14■□□□□ 0.49
USF1P22415 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USF1P22415 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.13■□□□□ 0.49
USF1P22415 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USF1P22415 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.13■□□□□ 0.49
USF1P22415 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.13■□□□□ 0.49
USF1P22415 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.13■□□□□ 0.49
USF1P22415 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USF1P22415 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USF1P22415 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.13■□□□□ 0.49
USF1P22415 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USF1P22415 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USF1P22415 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.13■□□□□ 0.49
USF1P22415 ESRRAP2-201ENST00000418437 1549 ntBASIC18.13■□□□□ 0.49
USF1P22415 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
USF1P22415 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.12■□□□□ 0.49
USF1P22415 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.12■□□□□ 0.49
USF1P22415 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.12■□□□□ 0.49
USF1P22415 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.12■□□□□ 0.49
USF1P22415 AC011767.1-201ENST00000617410 1153 ntBASIC18.12■□□□□ 0.49
USF1P22415 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.12■□□□□ 0.49
USF1P22415 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USF1P22415 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.11■□□□□ 0.49
USF1P22415 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USF1P22415 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.11■□□□□ 0.49
USF1P22415 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.11■□□□□ 0.49
USF1P22415 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.11■□□□□ 0.49
USF1P22415 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
USF1P22415 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
USF1P22415 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USF1P22415 PKD1P6-201ENST00000343738 4769 ntBASIC18.1■□□□□ 0.49
USF1P22415 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.1■□□□□ 0.49
USF1P22415 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
USF1P22415 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
USF1P22415 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.1■□□□□ 0.49
USF1P22415 AC104771.1-201ENST00000603335 964 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms