Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH3P20585 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MSH3P20585 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH3P20585 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH3P20585 MIR6084-201ENST00000622012 110 ntBASIC21.34■■□□□ 1.01
MSH3P20585 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MSH3P20585 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MSH3P20585 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 PKD1P6-201ENST00000343738 4769 ntBASIC21.34■■□□□ 1.01
MSH3P20585 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
MSH3P20585 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH3P20585 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.33■■□□□ 1.01
MSH3P20585 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH3P20585 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH3P20585 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH3P20585 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH3P20585 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH3P20585 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH3P20585 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH3P20585 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH3P20585 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH3P20585 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
MSH3P20585 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
MSH3P20585 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH3P20585 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.32■■□□□ 1
MSH3P20585 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.32■■□□□ 1
MSH3P20585 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 AP004607.7-201ENST00000527152 1677 ntBASIC21.32■■□□□ 1
MSH3P20585 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.32■■□□□ 1
MSH3P20585 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.32■■□□□ 1
MSH3P20585 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
MSH3P20585 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
MSH3P20585 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.32■■□□□ 1
MSH3P20585 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.32■■□□□ 1
MSH3P20585 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH3P20585 AC092053.2-201ENST00000640557 1818 ntBASIC21.32■■□□□ 1
MSH3P20585 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.31■■□□□ 1
MSH3P20585 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.31■■□□□ 1
MSH3P20585 BX005040.4-201ENST00000637145 1518 ntBASIC21.31■■□□□ 1
MSH3P20585 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
MSH3P20585 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
MSH3P20585 AL034346.1-201ENST00000568244 1277 ntBASIC21.31■■□□□ 1
MSH3P20585 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
MSH3P20585 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.31■■□□□ 1
MSH3P20585 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH3P20585 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MSH3P20585 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.3■■□□□ 1
MSH3P20585 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.3■■□□□ 1
MSH3P20585 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.3■■□□□ 1
MSH3P20585 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MSH3P20585 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MSH3P20585 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.3■■□□□ 1
MSH3P20585 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
MSH3P20585 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.3■■□□□ 1
MSH3P20585 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.3■■□□□ 1
MSH3P20585 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH3P20585 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.29■■□□□ 1
MSH3P20585 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.29■■□□□ 1
MSH3P20585 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.29■■□□□ 1
MSH3P20585 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms