Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
RAPGEF3O95398 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 MAX-217ENST00000557277 728 ntTSL 3 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
RAPGEF3O95398 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC32.71■■■□□ 2.83
RAPGEF3O95398 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC32.7■■■□□ 2.83
RAPGEF3O95398 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
RAPGEF3O95398 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC32.7■■■□□ 2.83
RAPGEF3O95398 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC32.7■■■□□ 2.83
RAPGEF3O95398 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC32.7■■■□□ 2.83
RAPGEF3O95398 AC010331.1-201ENST00000611423 582 ntBASIC32.7■■■□□ 2.83
RAPGEF3O95398 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.82
RAPGEF3O95398 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
RAPGEF3O95398 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC32.69■■■□□ 2.82
RAPGEF3O95398 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
RAPGEF3O95398 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
RAPGEF3O95398 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC32.69■■■□□ 2.82
RAPGEF3O95398 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC32.69■■■□□ 2.82
RAPGEF3O95398 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
RAPGEF3O95398 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC32.69■■■□□ 2.82
RAPGEF3O95398 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC32.68■■■□□ 2.82
RAPGEF3O95398 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
RAPGEF3O95398 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
RAPGEF3O95398 AP003097.1-201ENST00000530657 1135 ntBASIC32.68■■■□□ 2.82
RAPGEF3O95398 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC32.68■■■□□ 2.82
RAPGEF3O95398 AL359736.2-201ENST00000621992 437 ntBASIC32.68■■■□□ 2.82
RAPGEF3O95398 AC073912.3-201ENST00000624414 853 ntBASIC32.68■■■□□ 2.82
RAPGEF3O95398 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
RAPGEF3O95398 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC32.68■■■□□ 2.82
RAPGEF3O95398 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
RAPGEF3O95398 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 UBE2SP1-201ENST00000450587 669 ntBASIC32.67■■■□□ 2.82
RAPGEF3O95398 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC32.67■■■□□ 2.82
RAPGEF3O95398 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC32.67■■■□□ 2.82
RAPGEF3O95398 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC32.67■■■□□ 2.82
RAPGEF3O95398 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
RAPGEF3O95398 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC32.66■■■□□ 2.82
RAPGEF3O95398 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC32.66■■■□□ 2.82
RAPGEF3O95398 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
RAPGEF3O95398 GXYLT1P3-201ENST00000453058 1193 ntBASIC32.66■■■□□ 2.82
RAPGEF3O95398 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC32.66■■■□□ 2.82
RAPGEF3O95398 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
RAPGEF3O95398 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
RAPGEF3O95398 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
RAPGEF3O95398 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
RAPGEF3O95398 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC32.66■■■□□ 2.82
RAPGEF3O95398 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC32.66■■■□□ 2.82
RAPGEF3O95398 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC32.65■■■□□ 2.82
RAPGEF3O95398 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC32.65■■■□□ 2.82
RAPGEF3O95398 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RAPGEF3O95398 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RAPGEF3O95398 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC32.65■■■□□ 2.82
RAPGEF3O95398 AC211429.1-201ENST00000415277 523 ntBASIC32.65■■■□□ 2.82
RAPGEF3O95398 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC32.64■■■□□ 2.82
RAPGEF3O95398 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 OR2A1-AS1-201ENST00000462305 773 ntBASIC32.64■■■□□ 2.82
RAPGEF3O95398 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC32.64■■■□□ 2.82
RAPGEF3O95398 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC32.64■■■□□ 2.82
RAPGEF3O95398 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RAPGEF3O95398 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC32.64■■■□□ 2.82
RAPGEF3O95398 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
RAPGEF3O95398 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
RAPGEF3O95398 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC32.63■■■□□ 2.81
RAPGEF3O95398 AC010980.2-201ENST00000587099 1412 ntBASIC32.63■■■□□ 2.81
RAPGEF3O95398 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
RAPGEF3O95398 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
RAPGEF3O95398 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
RAPGEF3O95398 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC32.63■■■□□ 2.81
RAPGEF3O95398 ISCU-212ENST00000547005 795 ntTSL 3 BASIC32.63■■■□□ 2.81
RAPGEF3O95398 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC32.63■■■□□ 2.81
RAPGEF3O95398 MIR4497-201ENST00000583208 89 ntBASIC32.63■■■□□ 2.81
RAPGEF3O95398 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC32.62■■■□□ 2.81
RAPGEF3O95398 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
RAPGEF3O95398 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
RAPGEF3O95398 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC32.62■■■□□ 2.81
RAPGEF3O95398 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
RAPGEF3O95398 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
RAPGEF3O95398 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC32.62■■■□□ 2.81
RAPGEF3O95398 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC32.62■■■□□ 2.81
RAPGEF3O95398 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC32.62■■■□□ 2.81
RAPGEF3O95398 EEF1DP3-203ENST00000566025 782 ntBASIC32.62■■■□□ 2.81
RAPGEF3O95398 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms