Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 FTCD-205ENST00000446405 436 ntTSL 317.14■□□□□ 0.336e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.82■□□□□ 0.286e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.8■□□□□ 0.286e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-203ENST00000525083 1228 ntTSL 215.66■□□□□ 0.16e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-207ENST00000527004 1760 ntTSL 515.31■□□□□ 0.046e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.036e-8■■■□□ 19.1
SMNDC1O75940 CHKB-202ENST00000463053 886 ntTSL 315.04■□□□□ -06e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.046e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-207ENST00000639470 1207 ntTSL 1 (best)14.75□□□□□ -0.056e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.056e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.056e-8■■■□□ 19.1
SMNDC1O75940 HNRNPR-213ENST00000641107 646 nt14.72□□□□□ -0.056e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-217ENST00000534011 1955 ntTSL 214.71□□□□□ -0.056e-8■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.39□□□□□ -0.116e-8■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.98□□□□□ -0.176e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-218ENST00000534315 2210 ntTSL 1 (best)13.44□□□□□ -0.266e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-204ENST00000525770 1427 ntTSL 213.09□□□□□ -0.316e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.87□□□□□ -0.356e-8■■■□□ 19.1
SMNDC1O75940 TAOK2-201ENST00000279394 4246 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.366e-8■■■□□ 19.1
SMNDC1O75940 PPIA-210ENST00000620047 827 ntTSL 5 BASIC12.28□□□□□ -0.446e-8■■■□□ 19.1
SMNDC1O75940 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC12.28□□□□□ -0.446e-8■■■□□ 19.1
SMNDC1O75940 PPIA-208ENST00000489459 907 ntTSL 2 BASIC12.28□□□□□ -0.446e-8■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC12.26□□□□□ -0.456e-8■■■□□ 19.1
SMNDC1O75940 MRPS25-201ENST00000253686 4586 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.522e-11■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-204ENST00000528156 658 ntTSL 211.66□□□□□ -0.546e-8■■■□□ 19.1
SMNDC1O75940 EEF1D-214ENST00000526135 535 ntTSL 211.55□□□□□ -0.562e-7■■■□□ 19.1
SMNDC1O75940 MRPS25-202ENST00000420267 590 ntTSL 411.18□□□□□ -0.622e-11■■■□□ 19.1
SMNDC1O75940 PPIA-209ENST00000494484 2149 ntTSL 211.11□□□□□ -0.636e-8■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-201ENST00000501011 607 ntTSL 1 (best)10.88□□□□□ -0.676e-8■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-203ENST00000527627 504 ntTSL 310.88□□□□□ -0.676e-8■■■□□ 19.1
SMNDC1O75940 CLK2-207ENST00000497188 2702 ntTSL 210.53□□□□□ -0.726e-8■■■□□ 19.1
SMNDC1O75940 FOXRED1-210ENST00000530642 3045 ntTSL 29.45□□□□□ -0.96e-8■■■□□ 19.1
SMNDC1O75940 PPIA-205ENST00000479021 552 ntTSL 49.34□□□□□ -0.916e-8■■■□□ 19.1
SMNDC1O75940 MRPS25-207ENST00000496484 823 ntTSL 29.25□□□□□ -0.932e-11■■■□□ 19.1
SMNDC1O75940 RAB30-AS1-206ENST00000533528 340 ntTSL 59.21□□□□□ -0.946e-8■■■□□ 19.1
SMNDC1O75940 MRPS25-206ENST00000474866 540 ntTSL 39.07□□□□□ -0.962e-11■■■□□ 19.1
SMNDC1O75940 FOXRED1-216ENST00000533839 559 ntTSL 48.67□□□□□ -1.026e-8■■■□□ 19.1
SMNDC1O75940 MRPS25-205ENST00000449354 1119 ntTSL 2 BASIC8.47□□□□□ -1.052e-11■■■□□ 19.1
SMNDC1O75940 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.4□□□□□ -1.066e-8■■■□□ 19.1
SMNDC1O75940 PPIA-202ENST00000415933 863 ntTSL 28.39□□□□□ -1.076e-8■■■□□ 19.1
SMNDC1O75940 PPIA-206ENST00000480603 842 ntTSL 38.34□□□□□ -1.076e-8■■■□□ 19.1
SMNDC1O75940 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.136e-8■■■□□ 19.1
SMNDC1O75940 PRKDC-210ENST00000541488 719 ntTSL 37.73□□□□□ -1.176e-8■■■□□ 19.1
SMNDC1O75940 HNRNPR-206ENST00000464516 557 ntTSL 27.22□□□□□ -1.256e-8■■■□□ 19.1
SMNDC1O75940 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.416e-8■■■□□ 19.1
SMNDC1O75940 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.426e-8■■■□□ 19.1
SMNDC1O75940 PPIA-207ENST00000481437 570 ntTSL 26.09□□□□□ -1.436e-8■■■□□ 19.1
SMNDC1O75940 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.09□□□□□ -1.436e-8■■■□□ 19.1
SMNDC1O75940 GAK-209ENST00000507580 468 ntTSL 418.95■□□□□ 0.622e-6■■■□□ 19.1
SMNDC1O75940 GAK-219ENST00000512325 577 ntTSL 318.95■□□□□ 0.622e-6■■■□□ 19.1
SMNDC1O75940 GAK-207ENST00000505819 1326 ntTSL 518.69■□□□□ 0.582e-6■■■□□ 19.1
SMNDC1O75940 GAK-202ENST00000502656 554 ntTSL 417.3■□□□□ 0.362e-6■■■□□ 19.1
SMNDC1O75940 GAK-212ENST00000510022 618 ntTSL 49.85□□□□□ -0.832e-6■■■□□ 19.1
SMNDC1O75940 GAK-215ENST00000511229 568 ntTSL 36.81□□□□□ -1.322e-6■■■□□ 19.1
SMNDC1O75940 WDR6-219ENST00000498023 626 ntTSL 213.26□□□□□ -0.292e-18■■■□□ 19
SMNDC1O75940 GOLGA2-209ENST00000490257 1964 ntTSL 218.98■□□□□ 0.639e-7■■■□□ 19
SMNDC1O75940 GOLGA2-202ENST00000450617 1439 ntTSL 512.93□□□□□ -0.349e-7■■■□□ 19
SMNDC1O75940 GOLGA2-206ENST00000468488 531 ntTSL 311.04□□□□□ -0.649e-7■■■□□ 19
SMNDC1O75940 EGFL7-205ENST00000490469 456 ntTSL 515.32■□□□□ 0.043e-7■■■□□ 19
SMNDC1O75940 RPSA-209ENST00000495394 2058 ntTSL 1 (best)10.05□□□□□ -0.81e-22■■■□□ 19
SMNDC1O75940 SNORA62-201ENST00000365493 153 ntBASIC4.12□□□□□ -1.751e-22■■■□□ 19
SMNDC1O75940 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.321e-6■■■□□ 19
SMNDC1O75940 FANCA-230ENST00000568369 4601 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.671e-6■■■□□ 19
SMNDC1O75940 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.914e-6■■■□□ 19
SMNDC1O75940 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.24■□□□□ 0.834e-6■■■□□ 19
SMNDC1O75940 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.654e-6■■■□□ 19
SMNDC1O75940 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.21■□□□□ 0.184e-6■■■□□ 19
SMNDC1O75940 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.12■□□□□ 0.174e-6■■■□□ 19
SMNDC1O75940 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.4■□□□□ 0.064e-6■■■□□ 19
SMNDC1O75940 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.054e-6■■■□□ 19
SMNDC1O75940 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.38■□□□□ 0.054e-6■■■□□ 19
SMNDC1O75940 IMPDH1-207ENST00000469328 2295 ntTSL 514.99□□□□□ -0.014e-6■■■□□ 19
SMNDC1O75940 IMPDH1-211ENST00000484496 2422 ntTSL 514.37□□□□□ -0.114e-6■■■□□ 19
SMNDC1O75940 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.01■□□□□ 0.792e-6■■■□□ 19
SMNDC1O75940 NEU4-215ENST00000488997 541 ntTSL 419.65■□□□□ 0.742e-6■■■□□ 19
SMNDC1O75940 NEU4-212ENST00000435894 484 ntTSL 419.01■□□□□ 0.632e-6■■■□□ 19
SMNDC1O75940 NEU4-207ENST00000420288 845 ntTSL 317.31■□□□□ 0.362e-6■■■□□ 19
SMNDC1O75940 NEU4-209ENST00000426032 676 ntTSL 314.85□□□□□ -0.032e-6■■■□□ 19
SMNDC1O75940 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.692e-6■■■□□ 19
SMNDC1O75940 SLC19A1-203ENST00000417954 3572 ntTSL 1 (best)15.52■□□□□ 0.082e-6■■■□□ 19
SMNDC1O75940 HSPA9-207ENST00000507097 1796 ntTSL 214.15□□□□□ -0.147e-21■■■□□ 19
SMNDC1O75940 HSPA9-212ENST00000523929 780 ntTSL 412.78□□□□□ -0.367e-21■■■□□ 19
SMNDC1O75940 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.787e-21■■■□□ 19
SMNDC1O75940 HSPA9-202ENST00000501917 275 ntTSL 34.87□□□□□ -1.637e-21■■■□□ 19
SMNDC1O75940 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.2■□□□□ 0.182e-6■■■□□ 19
SMNDC1O75940 SEPT9-205ENST00000427674 3937 ntTSL 1 (best) BASIC12.52□□□□□ -0.412e-6■■■□□ 19
SMNDC1O75940 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.336e-7■■■□□ 18.9
SMNDC1O75940 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.216e-7■■■□□ 18.9
SMNDC1O75940 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.226e-7■■■□□ 18.9
SMNDC1O75940 ILF3-208ENST00000587928 4230 ntTSL 211.58□□□□□ -0.566e-7■■■□□ 18.9
SMNDC1O75940 MTA1-209ENST00000469140 1666 ntTSL 521.19■□□□□ 0.982e-7■■■□□ 18.9
SMNDC1O75940 ARVCF-206ENST00000467828 258 ntTSL 317.22■□□□□ 0.353e-6■■■□□ 18.9
SMNDC1O75940 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.093e-6■■■□□ 18.9
SMNDC1O75940 ANKRD11-204ENST00000378332 1982 ntTSL 219.8■□□□□ 0.765e-6■■■□□ 18.9
SMNDC1O75940 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.685e-6■■■□□ 18.9
SMNDC1O75940 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.25e-6■■■□□ 18.9
SMNDC1O75940 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.245e-6■■■□□ 18.9
SMNDC1O75940 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.25■□□□□ 0.355e-6■■■□□ 18.9
SMNDC1O75940 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.25■□□□□ 0.355e-6■■■□□ 18.9
SMNDC1O75940 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.22■□□□□ 0.355e-6■■■□□ 18.9
Retrieved 100 of 11,362 protein–RNA pairs in 68.1 ms