Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4BO75351 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS4BO75351 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4BO75351 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VPS4BO75351 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4BO75351 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 RASA4CP-201ENST00000424092 1398 ntBASIC20.98■□□□□ 0.95
VPS4BO75351 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VPS4BO75351 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS4BO75351 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
VPS4BO75351 AL499627.2-201ENST00000606283 725 ntBASIC20.98■□□□□ 0.95
VPS4BO75351 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VPS4BO75351 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS4BO75351 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4BO75351 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
VPS4BO75351 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.97■□□□□ 0.95
VPS4BO75351 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS4BO75351 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS4BO75351 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
VPS4BO75351 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4BO75351 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS4BO75351 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 AC027682.1-201ENST00000562846 899 ntBASIC20.96■□□□□ 0.95
VPS4BO75351 MIR4767-201ENST00000582827 78 ntBASIC20.96■□□□□ 0.95
VPS4BO75351 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.96■□□□□ 0.95
VPS4BO75351 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS4BO75351 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS4BO75351 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VPS4BO75351 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4BO75351 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VPS4BO75351 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 IRS3P-201ENST00000223076 1006 ntBASIC20.95■□□□□ 0.94
VPS4BO75351 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS4BO75351 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
VPS4BO75351 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS4BO75351 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4BO75351 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS4BO75351 AC090192.1-201ENST00000517740 490 ntBASIC20.94■□□□□ 0.94
VPS4BO75351 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS4BO75351 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4BO75351 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS4BO75351 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
VPS4BO75351 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
VPS4BO75351 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS4BO75351 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS4BO75351 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS4BO75351 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
VPS4BO75351 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS4BO75351 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
VPS4BO75351 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS4BO75351 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.93■□□□□ 0.94
VPS4BO75351 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS4BO75351 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
VPS4BO75351 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VPS4BO75351 RARRES2P11-201ENST00000635158 484 ntBASIC20.92■□□□□ 0.94
VPS4BO75351 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms