Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.38■□□□□ 0.53
XRCC3O43542 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.38■□□□□ 0.53
XRCC3O43542 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC3O43542 OXCT2P1-201ENST00000447263 1535 ntBASIC18.37■□□□□ 0.53
XRCC3O43542 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC3O43542 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC3O43542 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
XRCC3O43542 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC3O43542 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC3O43542 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC3O43542 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC3O43542 AC026471.6-201ENST00000622954 1905 ntBASIC18.36■□□□□ 0.53
XRCC3O43542 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.35■□□□□ 0.53
XRCC3O43542 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.35■□□□□ 0.53
XRCC3O43542 FEM1AP1-201ENST00000431297 1995 ntBASIC18.35■□□□□ 0.53
XRCC3O43542 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.35■□□□□ 0.53
XRCC3O43542 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC3O43542 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC3O43542 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.35■□□□□ 0.53
XRCC3O43542 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC3O43542 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC3O43542 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC3O43542 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.35■□□□□ 0.53
XRCC3O43542 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.34■□□□□ 0.53
XRCC3O43542 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.34■□□□□ 0.53
XRCC3O43542 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.34■□□□□ 0.53
XRCC3O43542 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.34■□□□□ 0.53
XRCC3O43542 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
XRCC3O43542 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
XRCC3O43542 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
XRCC3O43542 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
XRCC3O43542 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.33■□□□□ 0.53
XRCC3O43542 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.33■□□□□ 0.53
XRCC3O43542 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
XRCC3O43542 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
XRCC3O43542 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
XRCC3O43542 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.33■□□□□ 0.52
XRCC3O43542 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
XRCC3O43542 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.33■□□□□ 0.52
XRCC3O43542 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.33■□□□□ 0.52
XRCC3O43542 C17orf82-201ENST00000623772 1530 ntBASIC18.33■□□□□ 0.52
XRCC3O43542 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
XRCC3O43542 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
XRCC3O43542 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC18.32■□□□□ 0.52
XRCC3O43542 MIR4508-201ENST00000584178 70 ntBASIC18.32■□□□□ 0.52
XRCC3O43542 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC3O43542 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC3O43542 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC3O43542 AC079089.2-201ENST00000531211 1277 ntBASIC18.31■□□□□ 0.52
XRCC3O43542 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC3O43542 AC010980.1-201ENST00000587192 1142 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms