Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH4O15457 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH4O15457 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH4O15457 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH4O15457 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH4O15457 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH4O15457 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
MSH4O15457 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.23■■□□□ 1.47
MSH4O15457 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
MSH4O15457 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH4O15457 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH4O15457 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH4O15457 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH4O15457 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH4O15457 AP006587.3-201ENST00000525742 1516 ntBASIC24.22■■□□□ 1.47
MSH4O15457 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.22■■□□□ 1.47
MSH4O15457 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH4O15457 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH4O15457 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH4O15457 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH4O15457 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.21■■□□□ 1.47
MSH4O15457 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.21■■□□□ 1.47
MSH4O15457 NTF6G-201ENST00000591094 616 ntBASIC24.21■■□□□ 1.47
MSH4O15457 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
MSH4O15457 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.21■■□□□ 1.47
MSH4O15457 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
MSH4O15457 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH4O15457 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.47
MSH4O15457 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.2■■□□□ 1.47
MSH4O15457 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.2■■□□□ 1.46
MSH4O15457 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.2■■□□□ 1.46
MSH4O15457 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
MSH4O15457 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.2■■□□□ 1.46
MSH4O15457 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
MSH4O15457 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.2■■□□□ 1.46
MSH4O15457 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.2■■□□□ 1.46
MSH4O15457 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH4O15457 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
MSH4O15457 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.19■■□□□ 1.46
MSH4O15457 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.19■■□□□ 1.46
MSH4O15457 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.19■■□□□ 1.46
MSH4O15457 AC079140.4-201ENST00000507448 529 ntBASIC24.19■■□□□ 1.46
MSH4O15457 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.19■■□□□ 1.46
MSH4O15457 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH4O15457 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.19■■□□□ 1.46
MSH4O15457 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH4O15457 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
MSH4O15457 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH4O15457 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
MSH4O15457 AP004607.4-201ENST00000530158 1459 ntBASIC24.18■■□□□ 1.46
MSH4O15457 AC004854.2-201ENST00000608450 1441 ntBASIC24.18■■□□□ 1.46
MSH4O15457 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH4O15457 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH4O15457 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH4O15457 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH4O15457 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.17■■□□□ 1.46
MSH4O15457 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH4O15457 ECEL1P1-201ENST00000373592 1742 ntBASIC24.17■■□□□ 1.46
MSH4O15457 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH4O15457 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH4O15457 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
MSH4O15457 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
MSH4O15457 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.16■■□□□ 1.46
MSH4O15457 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.16■■□□□ 1.46
MSH4O15457 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms