Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 AC010141.3-201ENST00000456659 717 ntBASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
TRAV4A0A0B4J268 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 AL136116.3-201ENST00000402907 1138 ntBASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 OR7E47P-201ENST00000546390 1422 ntBASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV4A0A0B4J268 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV4A0A0B4J268 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AC010525.1-201ENST00000585559 441 ntBASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV4A0A0B4J268 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 AC131212.1-201ENST00000613771 668 ntBASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV4A0A0B4J268 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 OXCT2P1-201ENST00000447263 1535 ntBASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV4A0A0B4J268 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms