Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COMMD3-BMI1R4GMX3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COMMD3-BMI1R4GMX3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.14■□□□□ 0.82
COMMD3-BMI1R4GMX3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COMMD3-BMI1R4GMX3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC087289.5-201ENST00000586076 3175 ntBASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 MIR4281-201ENST00000580852 62 ntBASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC010980.1-201ENST00000587192 1142 ntBASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.13■□□□□ 0.81
COMMD3-BMI1R4GMX3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC244015.2-201ENST00000616358 1861 ntBASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 THA1P-201ENST00000590384 1145 ntBASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 AF131216.4-201ENST00000638924 1588 ntBASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COMMD3-BMI1R4GMX3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 KRT18P24-201ENST00000344739 1156 ntBASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COMMD3-BMI1R4GMX3 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COMMD3-BMI1R4GMX3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COMMD3-BMI1R4GMX3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms