Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.56■□□□□ 0.72
SHANK1Q9Y566 SLC7A5P1-201ENST00000568957 537 ntBASIC19.56■□□□□ 0.72
SHANK1Q9Y566 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 FAM201B-201ENST00000458407 597 ntBASIC19.56■□□□□ 0.72
SHANK1Q9Y566 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK1Q9Y566 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 ABCB10P4-201ENST00000566803 2184 ntBASIC19.55■□□□□ 0.72
SHANK1Q9Y566 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.55■□□□□ 0.72
SHANK1Q9Y566 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 AC133552.2-202ENST00000575694 574 ntBASIC19.54■□□□□ 0.72
SHANK1Q9Y566 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.54■□□□□ 0.72
SHANK1Q9Y566 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 RNA5SP413-201ENST00000516373 109 ntBASIC19.53■□□□□ 0.72
SHANK1Q9Y566 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK1Q9Y566 PRORSD1P-201ENST00000295112 541 ntBASIC19.52■□□□□ 0.72
SHANK1Q9Y566 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK1Q9Y566 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHANK1Q9Y566 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHANK1Q9Y566 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHANK1Q9Y566 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 RPS2P52-201ENST00000469610 820 ntBASIC19.51■□□□□ 0.71
SHANK1Q9Y566 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 AC133041.1-202ENST00000642053 222 ntBASIC19.51■□□□□ 0.71
SHANK1Q9Y566 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 AC009237.3-201ENST00000393279 1427 ntBASIC19.51■□□□□ 0.71
SHANK1Q9Y566 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK1Q9Y566 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 AC098590.1-201ENST00000468126 897 ntBASIC19.5■□□□□ 0.71
SHANK1Q9Y566 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms