Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC42Q9Y546 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC42Q9Y546 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC42Q9Y546 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC42Q9Y546 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC42Q9Y546 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC42Q9Y546 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC42Q9Y546 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 AC098818.2-201ENST00000564925 2320 ntBASIC20.32■□□□□ 0.84
LRRC42Q9Y546 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC42Q9Y546 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 AC131274.2-201ENST00000580697 1507 ntBASIC20.31■□□□□ 0.84
LRRC42Q9Y546 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC42Q9Y546 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 AL157400.5-201ENST00000507624 621 ntBASIC20.3■□□□□ 0.84
LRRC42Q9Y546 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 SMPD5-203ENST00000639008 1464 ntBASIC20.3■□□□□ 0.84
LRRC42Q9Y546 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC42Q9Y546 AC026471.1-201ENST00000564629 3026 ntBASIC20.29■□□□□ 0.84
LRRC42Q9Y546 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 AC073314.1-201ENST00000568729 2216 ntBASIC20.29■□□□□ 0.84
LRRC42Q9Y546 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC42Q9Y546 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC42Q9Y546 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms