Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.44■■□□□ 1.18
DDX56Q9NY93 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.44■■□□□ 1.18
DDX56Q9NY93 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.44■■□□□ 1.18
DDX56Q9NY93 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.43■■□□□ 1.18
DDX56Q9NY93 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX56Q9NY93 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX56Q9NY93 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
DDX56Q9NY93 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.43■■□□□ 1.18
DDX56Q9NY93 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
DDX56Q9NY93 PKD1P6-201ENST00000343738 4769 ntBASIC22.43■■□□□ 1.18
DDX56Q9NY93 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
DDX56Q9NY93 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX56Q9NY93 SLC47A1P1-202ENST00000449666 945 ntBASIC22.42■■□□□ 1.18
DDX56Q9NY93 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX56Q9NY93 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 AL136116.3-201ENST00000402907 1138 ntBASIC22.41■■□□□ 1.18
DDX56Q9NY93 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX56Q9NY93 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX56Q9NY93 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
DDX56Q9NY93 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
DDX56Q9NY93 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX56Q9NY93 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
DDX56Q9NY93 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.4■■□□□ 1.18
DDX56Q9NY93 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
DDX56Q9NY93 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
DDX56Q9NY93 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
DDX56Q9NY93 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
DDX56Q9NY93 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
DDX56Q9NY93 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.18
DDX56Q9NY93 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX56Q9NY93 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX56Q9NY93 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.39■■□□□ 1.17
DDX56Q9NY93 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
DDX56Q9NY93 AL034346.1-201ENST00000568244 1277 ntBASIC22.39■■□□□ 1.17
DDX56Q9NY93 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
DDX56Q9NY93 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.39■■□□□ 1.17
DDX56Q9NY93 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX56Q9NY93 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.39■■□□□ 1.17
DDX56Q9NY93 AC026310.3-201ENST00000625186 2373 ntBASIC22.39■■□□□ 1.17
DDX56Q9NY93 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX56Q9NY93 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX56Q9NY93 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX56Q9NY93 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX56Q9NY93 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX56Q9NY93 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.37■■□□□ 1.17
DDX56Q9NY93 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX56Q9NY93 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX56Q9NY93 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.37■■□□□ 1.17
DDX56Q9NY93 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.37■■□□□ 1.17
DDX56Q9NY93 AC104564.3-201ENST00000582367 638 ntBASIC22.37■■□□□ 1.17
DDX56Q9NY93 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DDX56Q9NY93 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
DDX56Q9NY93 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms