Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP1AQ9HD42 AC004687.1-201ENST00000579003 1625 ntBASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP1AQ9HD42 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP1AQ9HD42 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CHMP1AQ9HD42 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
CHMP1AQ9HD42 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CHMP1AQ9HD42 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.39■□□□□ 0.54
CHMP1AQ9HD42 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 AC009102.2-201ENST00000606772 1639 ntBASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 MIR4787-201ENST00000607364 84 ntBASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CHMP1AQ9HD42 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 TSPY9P-201ENST00000440215 945 ntBASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 TSPY11P-201ENST00000442607 1045 ntBASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 Z92544.1-202ENST00000571933 1220 ntBASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CHMP1AQ9HD42 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms