Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 AC133041.1-202ENST00000642053 222 ntBASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H2Q9HBD1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 AC105036.2-201ENST00000569468 176 ntBASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H2Q9HBD1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.18■■□□□ 1.3
RC3H2Q9HBD1 AC092068.2-201ENST00000590491 1708 ntBASIC23.18■■□□□ 1.3
RC3H2Q9HBD1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H2Q9HBD1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H2Q9HBD1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H2Q9HBD1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 SLC7A5P1-201ENST00000568957 537 ntBASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RC3H2Q9HBD1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 ANOS2P-203ENST00000472227 1816 ntBASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H2Q9HBD1 LINC01960-201ENST00000563759 1884 ntBASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 EEF1DP3-203ENST00000566025 782 ntBASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 AC013268.1-206ENST00000638368 961 ntBASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 AC112229.1-201ENST00000639295 961 ntBASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H2Q9HBD1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RC3H2Q9HBD1 AP004607.7-201ENST00000527152 1677 ntBASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H2Q9HBD1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 CYP2T1P-201ENST00000432607 1285 ntBASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 AC007322.4-201ENST00000509611 723 ntBASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 AC068338.2-201ENST00000563278 1430 ntBASIC23.13■■□□□ 1.29
RC3H2Q9HBD1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H2Q9HBD1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 TERF1P5-201ENST00000477545 1207 ntBASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms