Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SEC61A2Q9H9S3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.27■□□□□ 0.67
SEC61A2Q9H9S3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 AL355001.2-201ENST00000620617 1191 ntBASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.26■□□□□ 0.67
SEC61A2Q9H9S3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 SLC47A1P1-202ENST00000449666 945 ntBASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 AC010525.1-201ENST00000585559 441 ntBASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 CA15P2-201ENST00000611168 834 ntBASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEC61A2Q9H9S3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 MIR939-201ENST00000401314 82 ntBASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 AC008764.7-201ENST00000593779 1081 ntBASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 AL136967.2-201ENST00000623968 743 ntBASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEC61A2Q9H9S3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 OR2I1P-207ENST00000453522 948 ntBASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 AL031602.1-201ENST00000633169 911 ntBASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEC61A2Q9H9S3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 C11orf96-202ENST00000528572 1834 ntBASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SEC61A2Q9H9S3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AC099791.1-201ENST00000416440 715 ntBASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AC087239.1-201ENST00000622671 572 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms