Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LIME1Q9H400 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.93■□□□□ 0.62
LIME1Q9H400 DUX4L4-201ENST00000566884 1269 ntBASIC18.93■□□□□ 0.62
LIME1Q9H400 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.93■□□□□ 0.62
LIME1Q9H400 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.93■□□□□ 0.62
LIME1Q9H400 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LIME1Q9H400 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.92■□□□□ 0.62
LIME1Q9H400 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.92■□□□□ 0.62
LIME1Q9H400 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.92■□□□□ 0.62
LIME1Q9H400 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.92■□□□□ 0.62
LIME1Q9H400 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.92■□□□□ 0.62
LIME1Q9H400 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIME1Q9H400 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.91■□□□□ 0.62
LIME1Q9H400 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 NCF1B-203ENST00000435988 1254 ntBASIC18.91■□□□□ 0.62
LIME1Q9H400 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.91■□□□□ 0.62
LIME1Q9H400 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.91■□□□□ 0.62
LIME1Q9H400 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LIME1Q9H400 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.91■□□□□ 0.62
LIME1Q9H400 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 GUSBP5-202ENST00000510805 1989 ntBASIC18.91■□□□□ 0.62
LIME1Q9H400 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LIME1Q9H400 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 FP325331.1-202ENST00000623531 1380 ntBASIC18.91■□□□□ 0.62
LIME1Q9H400 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIME1Q9H400 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.91■□□□□ 0.62
LIME1Q9H400 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LIME1Q9H400 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.9■□□□□ 0.62
LIME1Q9H400 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.9■□□□□ 0.62
LIME1Q9H400 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.9■□□□□ 0.62
LIME1Q9H400 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.9■□□□□ 0.62
LIME1Q9H400 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.9■□□□□ 0.62
LIME1Q9H400 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LIME1Q9H400 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIME1Q9H400 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LIME1Q9H400 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIME1Q9H400 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.89■□□□□ 0.61
LIME1Q9H400 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.89■□□□□ 0.61
LIME1Q9H400 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.89■□□□□ 0.61
LIME1Q9H400 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
LIME1Q9H400 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.89■□□□□ 0.61
LIME1Q9H400 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.89■□□□□ 0.61
LIME1Q9H400 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIME1Q9H400 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 LINC00526-201ENST00000581067 1875 ntBASIC18.88■□□□□ 0.61
LIME1Q9H400 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.88■□□□□ 0.61
LIME1Q9H400 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.88■□□□□ 0.61
LIME1Q9H400 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.88■□□□□ 0.61
LIME1Q9H400 MIR663A-201ENST00000385250 93 ntBASIC18.88■□□□□ 0.61
LIME1Q9H400 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.88■□□□□ 0.61
LIME1Q9H400 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIME1Q9H400 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIME1Q9H400 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIME1Q9H400 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms