Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 AC142086.2-201ENST00000569753 217 ntBASIC21.67■■□□□ 1.06
HMGB4Q8WW32 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB4Q8WW32 AC092068.2-201ENST00000590491 1708 ntBASIC21.66■■□□□ 1.06
HMGB4Q8WW32 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 AP004607.7-201ENST00000527152 1677 ntBASIC21.66■■□□□ 1.06
HMGB4Q8WW32 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HMGB4Q8WW32 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 SLC29A4P1-201ENST00000398760 971 ntBASIC21.65■■□□□ 1.06
HMGB4Q8WW32 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB4Q8WW32 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.64■■□□□ 1.06
HMGB4Q8WW32 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB4Q8WW32 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB4Q8WW32 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB4Q8WW32 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB4Q8WW32 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGB4Q8WW32 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGB4Q8WW32 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.64■■□□□ 1.05
HMGB4Q8WW32 SLC7A5P2-201ENST00000553010 536 ntBASIC21.64■■□□□ 1.05
HMGB4Q8WW32 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGB4Q8WW32 TMEM191A-211ENST00000637163 1067 ntBASIC21.64■■□□□ 1.05
HMGB4Q8WW32 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 GUSBP6-202ENST00000438529 1198 ntBASIC21.63■■□□□ 1.05
HMGB4Q8WW32 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 AL138781.1-201ENST00000566567 1274 ntBASIC21.63■■□□□ 1.05
HMGB4Q8WW32 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGB4Q8WW32 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 TSPY20P-201ENST00000450910 630 ntBASIC21.62■■□□□ 1.05
HMGB4Q8WW32 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB4Q8WW32 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 AC010141.2-201ENST00000452426 721 ntBASIC21.61■■□□□ 1.05
HMGB4Q8WW32 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB4Q8WW32 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms