Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA3Q8IX90 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19■□□□□ 0.63
SKA3Q8IX90 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19■□□□□ 0.63
SKA3Q8IX90 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19■□□□□ 0.63
SKA3Q8IX90 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19■□□□□ 0.63
SKA3Q8IX90 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA3Q8IX90 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 EP400NL-214ENST00000641289 2402 ntBASIC18.99■□□□□ 0.63
SKA3Q8IX90 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA3Q8IX90 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.99■□□□□ 0.63
SKA3Q8IX90 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA3Q8IX90 OR7E47P-201ENST00000546390 1422 ntBASIC18.98■□□□□ 0.63
SKA3Q8IX90 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SKA3Q8IX90 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 LINC00565-201ENST00000562710 2331 ntBASIC18.97■□□□□ 0.63
SKA3Q8IX90 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA3Q8IX90 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA3Q8IX90 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA3Q8IX90 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA3Q8IX90 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA3Q8IX90 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA3Q8IX90 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA3Q8IX90 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA3Q8IX90 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms