Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 AC006015.1-201ENST00000429970 570 ntBASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 RARRES2P11-201ENST00000635158 484 ntBASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC60Q8IWA6 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 KRT87P-202ENST00000534226 1464 ntBASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC60Q8IWA6 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 KRT19P1-201ENST00000405746 1186 ntBASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 AC137761.2-201ENST00000561729 223 ntBASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 AC145350.3-201ENST00000569033 163 ntBASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC60Q8IWA6 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.01■■□□□ 1.43
CCDC60Q8IWA6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 AC090192.1-201ENST00000517740 490 ntBASIC24■■□□□ 1.43
CCDC60Q8IWA6 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 AL034346.1-201ENST00000568244 1277 ntBASIC24■■□□□ 1.43
CCDC60Q8IWA6 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC60Q8IWA6 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24■■□□□ 1.43
CCDC60Q8IWA6 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 AC104187.1-201ENST00000607510 612 ntBASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 AP006587.3-201ENST00000525742 1516 ntBASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC60Q8IWA6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms