Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN1P58418 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CLRN1P58418 OXCT2P1-201ENST00000447263 1535 ntBASIC19.22■□□□□ 0.67
CLRN1P58418 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CLRN1P58418 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.22■□□□□ 0.67
CLRN1P58418 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.22■□□□□ 0.67
CLRN1P58418 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLRN1P58418 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.22■□□□□ 0.67
CLRN1P58418 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLRN1P58418 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN1P58418 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
CLRN1P58418 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.21■□□□□ 0.67
CLRN1P58418 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.21■□□□□ 0.67
CLRN1P58418 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 AC126544.1-201ENST00000580842 1059 ntBASIC19.21■□□□□ 0.67
CLRN1P58418 AC233992.3-201ENST00000607491 485 ntBASIC19.21■□□□□ 0.67
CLRN1P58418 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CLRN1P58418 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN1P58418 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.2■□□□□ 0.66
CLRN1P58418 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLRN1P58418 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.2■□□□□ 0.66
CLRN1P58418 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.2■□□□□ 0.66
CLRN1P58418 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CLRN1P58418 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.2■□□□□ 0.66
CLRN1P58418 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.2■□□□□ 0.66
CLRN1P58418 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN1P58418 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CLRN1P58418 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.19■□□□□ 0.66
CLRN1P58418 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLRN1P58418 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.19■□□□□ 0.66
CLRN1P58418 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLRN1P58418 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.19■□□□□ 0.66
CLRN1P58418 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.19■□□□□ 0.66
CLRN1P58418 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.19■□□□□ 0.66
CLRN1P58418 AC008764.7-201ENST00000593779 1081 ntBASIC19.19■□□□□ 0.66
CLRN1P58418 AC106739.1-201ENST00000617035 715 ntBASIC19.19■□□□□ 0.66
CLRN1P58418 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLRN1P58418 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.19■□□□□ 0.66
CLRN1P58418 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.19■□□□□ 0.66
CLRN1P58418 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN1P58418 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CLRN1P58418 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.18■□□□□ 0.66
CLRN1P58418 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.18■□□□□ 0.66
CLRN1P58418 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CLRN1P58418 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.18■□□□□ 0.66
CLRN1P58418 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.18■□□□□ 0.66
CLRN1P58418 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.18■□□□□ 0.66
CLRN1P58418 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CLRN1P58418 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.18■□□□□ 0.66
CLRN1P58418 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms