Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CDH11P55287 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CDH11P55287 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CDH11P55287 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CDH11P55287 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH11P55287 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.64■□□□□ 0.74
CDH11P55287 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDH11P55287 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDH11P55287 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CDH11P55287 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH11P55287 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH11P55287 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.64■□□□□ 0.73
CDH11P55287 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CDH11P55287 AC135279.3-201ENST00000610945 1311 ntBASIC19.64■□□□□ 0.73
CDH11P55287 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.64■□□□□ 0.73
CDH11P55287 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDH11P55287 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH11P55287 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.64■□□□□ 0.73
CDH11P55287 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.64■□□□□ 0.73
CDH11P55287 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH11P55287 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.64■□□□□ 0.73
CDH11P55287 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.63■□□□□ 0.73
CDH11P55287 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH11P55287 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDH11P55287 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDH11P55287 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH11P55287 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.63■□□□□ 0.73
CDH11P55287 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH11P55287 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDH11P55287 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH11P55287 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH11P55287 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH11P55287 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
CDH11P55287 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CDH11P55287 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.62■□□□□ 0.73
CDH11P55287 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.62■□□□□ 0.73
CDH11P55287 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.62■□□□□ 0.73
CDH11P55287 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.62■□□□□ 0.73
CDH11P55287 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.62■□□□□ 0.73
CDH11P55287 AC092171.4-201ENST00000609130 632 ntBASIC19.62■□□□□ 0.73
CDH11P55287 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CDH11P55287 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDH11P55287 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CDH11P55287 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CDH11P55287 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 DUX4L19-201ENST00000557448 1267 ntBASIC19.61■□□□□ 0.73
CDH11P55287 AC142381.2-201ENST00000566120 298 ntBASIC19.61■□□□□ 0.73
CDH11P55287 DUX4L4-201ENST00000566884 1269 ntBASIC19.61■□□□□ 0.73
CDH11P55287 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.61■□□□□ 0.73
CDH11P55287 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDH11P55287 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.61■□□□□ 0.73
CDH11P55287 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.61■□□□□ 0.73
CDH11P55287 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CDH11P55287 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 AC024257.2-201ENST00000549699 147 ntBASIC19.6■□□□□ 0.73
CDH11P55287 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CDH11P55287 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDH11P55287 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH11P55287 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH11P55287 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.59■□□□□ 0.73
CDH11P55287 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CDH11P55287 SYT6-210ENST00000641643 1587 ntBASIC19.59■□□□□ 0.73
CDH11P55287 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH11P55287 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
CDH11P55287 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH11P55287 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH11P55287 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.58■□□□□ 0.73
CDH11P55287 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms