Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.02■■□□□ 1.28
VCPP55072 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.02■■□□□ 1.28
VCPP55072 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.02■■□□□ 1.28
VCPP55072 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
VCPP55072 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
VCPP55072 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
VCPP55072 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
VCPP55072 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
VCPP55072 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
VCPP55072 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
VCPP55072 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.01■■□□□ 1.27
VCPP55072 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.01■■□□□ 1.27
VCPP55072 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 LINC01529-204ENST00000636474 1715 ntBASIC23.01■■□□□ 1.27
VCPP55072 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VCPP55072 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.01■■□□□ 1.27
VCPP55072 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.01■■□□□ 1.27
VCPP55072 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
VCPP55072 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23■■□□□ 1.27
VCPP55072 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 NT5C3AP1-201ENST00000394500 1012 ntBASIC23■■□□□ 1.27
VCPP55072 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23■■□□□ 1.27
VCPP55072 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 DUX4L4-201ENST00000566884 1269 ntBASIC23■■□□□ 1.27
VCPP55072 AL499627.2-201ENST00000606283 725 ntBASIC23■■□□□ 1.27
VCPP55072 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23■■□□□ 1.27
VCPP55072 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 FP325331.1-202ENST00000623531 1380 ntBASIC23■■□□□ 1.27
VCPP55072 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23■■□□□ 1.27
VCPP55072 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
VCPP55072 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.99■■□□□ 1.27
VCPP55072 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
VCPP55072 NCF1B-203ENST00000435988 1254 ntBASIC22.99■■□□□ 1.27
VCPP55072 AP005435.1-201ENST00000529293 1178 ntBASIC22.99■■□□□ 1.27
VCPP55072 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.99■■□□□ 1.27
VCPP55072 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
VCPP55072 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.99■■□□□ 1.27
VCPP55072 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VCPP55072 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
VCPP55072 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.99■■□□□ 1.27
VCPP55072 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
VCPP55072 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
VCPP55072 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.98■■□□□ 1.27
VCPP55072 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.98■■□□□ 1.27
VCPP55072 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.98■■□□□ 1.27
VCPP55072 AC010525.1-201ENST00000585559 441 ntBASIC22.98■■□□□ 1.27
VCPP55072 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.98■■□□□ 1.27
VCPP55072 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.98■■□□□ 1.27
VCPP55072 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 AC127496.7-201ENST00000625110 1798 ntBASIC22.98■■□□□ 1.27
VCPP55072 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
VCPP55072 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.98■■□□□ 1.27
VCPP55072 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.98■■□□□ 1.27
VCPP55072 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VCPP55072 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.97■■□□□ 1.27
VCPP55072 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.97■■□□□ 1.27
VCPP55072 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
VCPP55072 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.97■■□□□ 1.27
VCPP55072 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.97■■□□□ 1.27
VCPP55072 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.97■■□□□ 1.27
VCPP55072 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VCPP55072 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.97■■□□□ 1.27
VCPP55072 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 161.8 ms