Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.42■□□□□ 0.38
CDX1P47902 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.42■□□□□ 0.38
CDX1P47902 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDX1P47902 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.42■□□□□ 0.38
CDX1P47902 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CDX1P47902 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.41■□□□□ 0.38
CDX1P47902 AC142381.2-201ENST00000566120 298 ntBASIC17.41■□□□□ 0.38
CDX1P47902 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.41■□□□□ 0.38
CDX1P47902 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDX1P47902 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.41■□□□□ 0.38
CDX1P47902 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CDX1P47902 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 FP325331.1-202ENST00000623531 1380 ntBASIC17.4■□□□□ 0.38
CDX1P47902 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CDX1P47902 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CDX1P47902 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CDX1P47902 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.4■□□□□ 0.38
CDX1P47902 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.4■□□□□ 0.38
CDX1P47902 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.4■□□□□ 0.38
CDX1P47902 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CDX1P47902 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CDX1P47902 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CDX1P47902 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CDX1P47902 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CDX1P47902 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC17.39■□□□□ 0.38
CDX1P47902 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.39■□□□□ 0.37
CDX1P47902 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CDX1P47902 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 SUDS3P1-201ENST00000505831 966 ntBASIC17.39■□□□□ 0.37
CDX1P47902 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
CDX1P47902 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 AC242852.2-201ENST00000615738 1807 ntBASIC17.39■□□□□ 0.37
CDX1P47902 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.39■□□□□ 0.37
CDX1P47902 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CDX1P47902 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CDX1P47902 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.38■□□□□ 0.37
CDX1P47902 AL031432.3-201ENST00000607698 485 ntBASIC17.38■□□□□ 0.37
CDX1P47902 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDX1P47902 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.38■□□□□ 0.37
CDX1P47902 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CDX1P47902 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
CDX1P47902 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms