Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 RASSF1-AS1-201ENST00000629828 790 ntBASIC16.37■□□□□ 0.21
HLA-DMBP28068 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 AC241377.3-202ENST00000626088 1088 ntBASIC16.36■□□□□ 0.21
HLA-DMBP28068 AC241585.3-202ENST00000628937 1088 ntBASIC16.36■□□□□ 0.21
HLA-DMBP28068 AC245100.8-202ENST00000629247 1058 ntBASIC16.36■□□□□ 0.21
HLA-DMBP28068 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DMBP28068 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DMBP28068 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 MIR4466-201ENST00000606121 54 ntBASIC16.35■□□□□ 0.21
HLA-DMBP28068 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 AC019069.1-201ENST00000610008 1333 ntBASIC16.35■□□□□ 0.21
HLA-DMBP28068 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.35■□□□□ 0.21
HLA-DMBP28068 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DMBP28068 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 AC005229.4-201ENST00000610085 2198 ntBASIC16.34■□□□□ 0.21
HLA-DMBP28068 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 QDPR-206ENST00000508623 601 ntTSL 3 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DMBP28068 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DMBP28068 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DMBP28068 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DMBP28068 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC16.33■□□□□ 0.21
HLA-DMBP28068 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.33■□□□□ 0.21
HLA-DMBP28068 AC026471.6-201ENST00000622954 1905 ntBASIC16.33■□□□□ 0.21
HLA-DMBP28068 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.33■□□□□ 0.21
HLA-DMBP28068 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.33■□□□□ 0.21
HLA-DMBP28068 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DMBP28068 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms