Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC28.77■■■□□ 2.2
CSB-PGBD3P0DP91 AC073210.2-201ENST00000430369 194 ntBASIC28.77■■■□□ 2.2
CSB-PGBD3P0DP91 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
CSB-PGBD3P0DP91 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
CSB-PGBD3P0DP91 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC28.76■■■□□ 2.2
CSB-PGBD3P0DP91 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
CSB-PGBD3P0DP91 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.19
CSB-PGBD3P0DP91 AC138907.5-202ENST00000569484 235 ntBASIC28.76■■■□□ 2.19
CSB-PGBD3P0DP91 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC28.76■■■□□ 2.19
CSB-PGBD3P0DP91 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CSB-PGBD3P0DP91 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
CSB-PGBD3P0DP91 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 KRT18P20-201ENST00000548986 1279 ntBASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 AP004607.7-201ENST00000527152 1677 ntBASIC28.74■■■□□ 2.19
CSB-PGBD3P0DP91 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 FXN-202ENST00000396364 980 ntTSL 5 BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 AC079089.2-201ENST00000531211 1277 ntBASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 AC008687.6-201ENST00000596318 630 ntBASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
CSB-PGBD3P0DP91 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 AC093827.2-201ENST00000512654 315 ntBASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CSB-PGBD3P0DP91 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 RNA5SP413-201ENST00000516373 109 ntBASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CSB-PGBD3P0DP91 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CSB-PGBD3P0DP91 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CSB-PGBD3P0DP91 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CSB-PGBD3P0DP91 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 MIR4758-201ENST00000577688 71 ntBASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 AC013268.1-206ENST00000638368 961 ntBASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 AC112229.1-201ENST00000639295 961 ntBASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CSB-PGBD3P0DP91 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 POU5F1P3-201ENST00000428824 1078 ntBASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 UQCRFS1P1-201ENST00000435169 820 ntBASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
CSB-PGBD3P0DP91 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 CYP2T1P-201ENST00000432607 1285 ntBASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 TERF1P5-201ENST00000477545 1207 ntBASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
CSB-PGBD3P0DP91 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 PHB2-213ENST00000546111 858 ntTSL 2 BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 LINC01960-201ENST00000563759 1884 ntBASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CSB-PGBD3P0DP91 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms