Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.24■□□□□ 0.99
SNX3O60493 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
SNX3O60493 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
SNX3O60493 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.24■□□□□ 0.99
SNX3O60493 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SNX3O60493 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNX3O60493 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.24■□□□□ 0.99
SNX3O60493 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SNX3O60493 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SNX3O60493 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SNX3O60493 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.23■□□□□ 0.99
SNX3O60493 DUX4L9-201ENST00000449051 1259 ntBASIC21.23■□□□□ 0.99
SNX3O60493 AC022616.5-201ENST00000518796 181 ntBASIC21.23■□□□□ 0.99
SNX3O60493 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SNX3O60493 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SNX3O60493 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.23■□□□□ 0.99
SNX3O60493 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SNX3O60493 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SNX3O60493 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SNX3O60493 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SNX3O60493 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SNX3O60493 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SNX3O60493 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.22■□□□□ 0.99
SNX3O60493 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNX3O60493 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SNX3O60493 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.21■□□□□ 0.99
SNX3O60493 OXCT2P1-201ENST00000447263 1535 ntBASIC21.21■□□□□ 0.99
SNX3O60493 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.21■□□□□ 0.99
SNX3O60493 AC026471.6-201ENST00000622954 1905 ntBASIC21.21■□□□□ 0.99
SNX3O60493 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.21■□□□□ 0.99
SNX3O60493 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNX3O60493 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
SNX3O60493 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SNX3O60493 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
SNX3O60493 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SNX3O60493 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
SNX3O60493 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SNX3O60493 MIR639-201ENST00000384974 98 ntBASIC21.2■□□□□ 0.98
SNX3O60493 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SNX3O60493 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
SNX3O60493 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.2■□□□□ 0.98
SNX3O60493 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNX3O60493 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX3O60493 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
SNX3O60493 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX3O60493 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 GPX1-201ENST00000419349 1106 ntBASIC21.19■□□□□ 0.98
SNX3O60493 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.19■□□□□ 0.98
SNX3O60493 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX3O60493 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.19■□□□□ 0.98
SNX3O60493 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNX3O60493 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SNX3O60493 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SNX3O60493 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
SNX3O60493 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 GABARAPL3-202ENST00000624044 1851 ntBASIC21.18■□□□□ 0.98
SNX3O60493 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.18■□□□□ 0.98
SNX3O60493 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.18■□□□□ 0.98
SNX3O60493 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms