Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TMX2-CTNND1H3BSU7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC137761.2-201ENST00000561729 223 ntBASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC145350.3-201ENST00000569033 163 ntBASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 BX005040.4-201ENST00000637145 1518 ntBASIC21.09■□□□□ 0.97
TMX2-CTNND1H3BSU7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC006015.1-201ENST00000429970 570 ntBASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 TPRG1LP1-201ENST00000598702 760 ntBASIC21.08■□□□□ 0.97
TMX2-CTNND1H3BSU7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
TMX2-CTNND1H3BSU7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TMX2-CTNND1H3BSU7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
TMX2-CTNND1H3BSU7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 AC080038.1-201ENST00000611274 1154 ntBASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TMX2-CTNND1H3BSU7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.06■□□□□ 0.96
TMX2-CTNND1H3BSU7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TMX2-CTNND1H3BSU7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms