Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HIF3AQ9Y2N7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
HIF3AQ9Y2N7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HIF3AQ9Y2N7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HIF3AQ9Y2N7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 DUX4L19-201ENST00000557448 1267 ntBASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 MIR4466-201ENST00000606121 54 ntBASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HIF3AQ9Y2N7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 FAM99A-202ENST00000538190 1989 ntBASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HIF3AQ9Y2N7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 SYT6-210ENST00000641643 1587 ntBASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.48■□□□□ 0.71
HIF3AQ9Y2N7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 SERBP1P1-201ENST00000396021 1160 ntBASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 AC131281.2-201ENST00000520478 145 ntBASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HIF3AQ9Y2N7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 AC007375.3-201ENST00000600936 2314 ntBASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 AC087239.1-201ENST00000622671 572 ntBASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HIF3AQ9Y2N7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 OR7E47P-201ENST00000546390 1422 ntBASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 AC011298.3-201ENST00000615796 283 ntBASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 AC136469.2-201ENST00000623944 1028 ntBASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.45■□□□□ 0.7
HIF3AQ9Y2N7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms