Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.28■□□□□ 0.68
VSX1Q9NZR4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 DUX4L19-201ENST00000557448 1267 ntBASIC19.28■□□□□ 0.68
VSX1Q9NZR4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VSX1Q9NZR4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 FAM99A-202ENST00000538190 1989 ntBASIC19.27■□□□□ 0.68
VSX1Q9NZR4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 SERBP1P1-201ENST00000396021 1160 ntBASIC19.27■□□□□ 0.68
VSX1Q9NZR4 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VSX1Q9NZR4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.27■□□□□ 0.67
VSX1Q9NZR4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VSX1Q9NZR4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VSX1Q9NZR4 SYT6-210ENST00000641643 1587 ntBASIC19.27■□□□□ 0.67
VSX1Q9NZR4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.26■□□□□ 0.67
VSX1Q9NZR4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 AC131281.2-201ENST00000520478 145 ntBASIC19.25■□□□□ 0.67
VSX1Q9NZR4 AC087239.1-201ENST00000622671 572 ntBASIC19.25■□□□□ 0.67
VSX1Q9NZR4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VSX1Q9NZR4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.24■□□□□ 0.67
VSX1Q9NZR4 AC010525.1-201ENST00000585559 441 ntBASIC19.24■□□□□ 0.67
VSX1Q9NZR4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 AC011298.3-201ENST00000615796 283 ntBASIC19.24■□□□□ 0.67
VSX1Q9NZR4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 AC136469.2-201ENST00000623944 1028 ntBASIC19.24■□□□□ 0.67
VSX1Q9NZR4 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 OR7E47P-201ENST00000546390 1422 ntBASIC19.24■□□□□ 0.67
VSX1Q9NZR4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX1Q9NZR4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 AC010141.3-201ENST00000456659 717 ntBASIC19.23■□□□□ 0.67
VSX1Q9NZR4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 AC007375.3-201ENST00000600936 2314 ntBASIC19.23■□□□□ 0.67
VSX1Q9NZR4 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX1Q9NZR4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms