Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 THRA-202ENST00000394121 2260 ntTSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 WT1-AS_3.1-201ENST00000613262 234 ntBASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AL109923.1-201ENST00000618799 583 ntBASIC6.61□□□□□ -1.35
SYNE1Q8NF91 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AC093323.1-202ENST00000635031 2045 ntBASIC6.61□□□□□ -1.35
SYNE1Q8NF91 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 PREB-202ENST00000406567 1910 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC6.61□□□□□ -1.35
SYNE1Q8NF91 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 AC133561.1-201ENST00000568600 2415 ntBASIC6.6□□□□□ -1.35
SYNE1Q8NF91 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 AL050303.2-201ENST00000619798 666 ntBASIC6.6□□□□□ -1.35
SYNE1Q8NF91 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SYNE1Q8NF91 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 AC020763.4-201ENST00000623414 4170 ntBASIC6.59□□□□□ -1.35
SYNE1Q8NF91 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 AICDA-202ENST00000537228 667 ntTSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 BX005040.4-201ENST00000637145 1518 ntBASIC6.59□□□□□ -1.35
SYNE1Q8NF91 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 HSCB-202ENST00000398941 955 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms