Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NUDCD3Q8IVD9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.42■■□□□ 1.02
NUDCD3Q8IVD9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NUDCD3Q8IVD9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NUDCD3Q8IVD9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.41■■□□□ 1.02
NUDCD3Q8IVD9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 AC009102.2-201ENST00000606772 1639 ntBASIC21.4■■□□□ 1.02
NUDCD3Q8IVD9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.39■■□□□ 1.02
NUDCD3Q8IVD9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.39■■□□□ 1.02
NUDCD3Q8IVD9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.39■■□□□ 1.02
NUDCD3Q8IVD9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NUDCD3Q8IVD9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 AF106564.1-201ENST00000607058 2553 ntBASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUDCD3Q8IVD9 AC021242.3-201ENST00000607598 1377 ntBASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 FEM1AP4-201ENST00000443167 1987 ntBASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 AC073130.3-201ENST00000624389 2278 ntBASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
NUDCD3Q8IVD9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUDCD3Q8IVD9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 AL031848.2-201ENST00000607670 837 ntBASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NUDCD3Q8IVD9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms