Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SH3RF1Q7Z6J0 AC242852.2-201ENST00000615738 1807 ntBASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 AC006015.1-201ENST00000429970 570 ntBASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SH3RF1Q7Z6J0 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 AC073111.5-205ENST00000641717 521 ntBASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.83■■□□□ 1.57
SH3RF1Q7Z6J0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
SH3RF1Q7Z6J0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.56
SH3RF1Q7Z6J0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
SH3RF1Q7Z6J0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.82■■□□□ 1.56
SH3RF1Q7Z6J0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 AC133637.1-201ENST00000624115 1537 ntBASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.81■■□□□ 1.56
SH3RF1Q7Z6J0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 AC139530.1-201ENST00000575312 1977 ntBASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
SH3RF1Q7Z6J0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 AC104771.1-201ENST00000603335 964 ntBASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
SH3RF1Q7Z6J0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 LINC00565-201ENST00000562710 2331 ntBASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 AP005435.1-201ENST00000529293 1178 ntBASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms