Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP3Q7Z494 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
NPHP3Q7Z494 BET1L-204ENST00000410108 637 ntTSL 3 BASIC29.71■■■□□ 2.35
NPHP3Q7Z494 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC29.71■■■□□ 2.35
NPHP3Q7Z494 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
NPHP3Q7Z494 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
NPHP3Q7Z494 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
NPHP3Q7Z494 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 AC007322.4-201ENST00000509611 723 ntBASIC29.7■■■□□ 2.34
NPHP3Q7Z494 PHB2-213ENST00000546111 858 ntTSL 2 BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP3Q7Z494 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP3Q7Z494 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP3Q7Z494 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP3Q7Z494 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC29.69■■■□□ 2.34
NPHP3Q7Z494 TERF1P5-201ENST00000477545 1207 ntBASIC29.69■■■□□ 2.34
NPHP3Q7Z494 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 ADM-205ENST00000528544 586 ntTSL 2 BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC29.68■■■□□ 2.34
NPHP3Q7Z494 OR10C1-204ENST00000622521 1039 ntBASIC29.68■■■□□ 2.34
NPHP3Q7Z494 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 IRX5-204ENST00000560154 879 ntTSL 5 BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP3Q7Z494 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 BMP1-204ENST00000397814 836 ntTSL 4 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP3Q7Z494 DUSP8P5-201ENST00000422884 1815 ntBASIC29.65■■■□□ 2.34
NPHP3Q7Z494 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 RHEB-204ENST00000472642 900 ntTSL 3 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 AC083880.1-201ENST00000608266 535 ntBASIC29.65■■■□□ 2.34
NPHP3Q7Z494 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP3Q7Z494 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC29.64■■■□□ 2.34
NPHP3Q7Z494 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC29.64■■■□□ 2.33
NPHP3Q7Z494 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC29.64■■■□□ 2.33
NPHP3Q7Z494 AC138932.3-201ENST00000567634 1902 ntBASIC29.63■■■□□ 2.33
NPHP3Q7Z494 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
NPHP3Q7Z494 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC29.63■■■□□ 2.33
NPHP3Q7Z494 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.63■■■□□ 2.33
NPHP3Q7Z494 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
NPHP3Q7Z494 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
NPHP3Q7Z494 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 ESRRAP1-201ENST00000400596 1257 ntBASIC29.62■■■□□ 2.33
NPHP3Q7Z494 AL512625.2-201ENST00000417533 625 ntBASIC29.62■■■□□ 2.33
NPHP3Q7Z494 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 MYC-209ENST00000641252 345 ntBASIC29.62■■■□□ 2.33
NPHP3Q7Z494 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP3Q7Z494 LINC00543-201ENST00000567234 1845 ntBASIC29.61■■■□□ 2.33
NPHP3Q7Z494 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC29.61■■■□□ 2.33
NPHP3Q7Z494 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
NPHP3Q7Z494 AC093787.1-201ENST00000450396 207 ntBASIC29.61■■■□□ 2.33
NPHP3Q7Z494 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
NPHP3Q7Z494 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC29.61■■■□□ 2.33
NPHP3Q7Z494 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC29.61■■■□□ 2.33
NPHP3Q7Z494 AC142381.3-201ENST00000568208 1670 ntBASIC29.61■■■□□ 2.33
NPHP3Q7Z494 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms