Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC26.75■■□□□ 1.87
CCDC88AQ3V6T2 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC88AQ3V6T2 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.75■■□□□ 1.87
CCDC88AQ3V6T2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC88AQ3V6T2 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC88AQ3V6T2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
CCDC88AQ3V6T2 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC88AQ3V6T2 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC88AQ3V6T2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 AC010141.3-201ENST00000456659 717 ntBASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC88AQ3V6T2 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 AC105036.2-201ENST00000569468 176 ntBASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC26.71■■□□□ 1.87
CCDC88AQ3V6T2 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 CYP2T1P-201ENST00000432607 1285 ntBASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC26.7■■□□□ 1.87
CCDC88AQ3V6T2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 AC142381.4-202ENST00000563973 229 ntBASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 AC083880.1-201ENST00000608266 535 ntBASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CCDC88AQ3V6T2 ASL-203ENST00000380839 1765 ntTSL 5 BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
CCDC88AQ3V6T2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 KRT18P29-201ENST00000397031 1267 ntBASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 MFF-207ENST00000409565 1548 ntTSL 2 BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 MKRN4P-201ENST00000444706 1521 ntBASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 DUSP5P2-201ENST00000426873 1033 ntBASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.68■■□□□ 1.86
CCDC88AQ3V6T2 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC88AQ3V6T2 AC092068.2-201ENST00000590491 1708 ntBASIC26.67■■□□□ 1.86
CCDC88AQ3V6T2 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC88AQ3V6T2 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.67■■□□□ 1.86
CCDC88AQ3V6T2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC88AQ3V6T2 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 GCSHP5-201ENST00000443090 522 ntBASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 RARRES2P4-201ENST00000514074 484 ntBASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CCDC88AQ3V6T2 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms