Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BX276092.2-201ENST00000417668 665 ntBASIC15.93■□□□□ 0.14
PRKDCP78527 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.93■□□□□ 0.14
PRKDCP78527 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.93■□□□□ 0.14
PRKDCP78527 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.93■□□□□ 0.14
PRKDCP78527 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.93■□□□□ 0.14
PRKDCP78527 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PRKDCP78527 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.93■□□□□ 0.14
PRKDCP78527 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
PRKDCP78527 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC15.93■□□□□ 0.14
PRKDCP78527 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
PRKDCP78527 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
PRKDCP78527 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 KRT18P35-201ENST00000510488 1269 ntBASIC15.92■□□□□ 0.14
PRKDCP78527 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.92■□□□□ 0.14
PRKDCP78527 ISCU-212ENST00000547005 795 ntTSL 3 BASIC15.92■□□□□ 0.14
PRKDCP78527 AC005224.4-201ENST00000583262 1652 ntBASIC15.92■□□□□ 0.14
PRKDCP78527 AC135731.1-201ENST00000569415 2548 ntBASIC15.92■□□□□ 0.14
PRKDCP78527 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
PRKDCP78527 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC15.92■□□□□ 0.14
PRKDCP78527 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
PRKDCP78527 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 LSR-205ENST00000427250 1606 ntTSL 2 BASIC15.92■□□□□ 0.14
PRKDCP78527 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PRKDCP78527 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.92■□□□□ 0.14
PRKDCP78527 TERF1P5-201ENST00000477545 1207 ntBASIC15.92■□□□□ 0.14
PRKDCP78527 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC15.92■□□□□ 0.14
PRKDCP78527 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.92■□□□□ 0.14
PRKDCP78527 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 AC008403.3-201ENST00000598924 454 ntBASIC15.91■□□□□ 0.14
PRKDCP78527 REXO1L12P-201ENST00000622156 912 ntBASIC15.91■□□□□ 0.14
PRKDCP78527 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
PRKDCP78527 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC15.91■□□□□ 0.14
PRKDCP78527 AC008694.1-202ENST00000636953 945 ntBASIC15.91■□□□□ 0.14
PRKDCP78527 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.91■□□□□ 0.14
PRKDCP78527 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PRKDCP78527 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PRKDCP78527 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.91■□□□□ 0.14
PRKDCP78527 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.91■□□□□ 0.14
PRKDCP78527 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.91■□□□□ 0.14
PRKDCP78527 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKDCP78527 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.9■□□□□ 0.14
PRKDCP78527 DUSP8P5-201ENST00000422884 1815 ntBASIC15.9■□□□□ 0.14
PRKDCP78527 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.9■□□□□ 0.14
PRKDCP78527 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC15.9■□□□□ 0.14
PRKDCP78527 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKDCP78527 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC15.9■□□□□ 0.14
PRKDCP78527 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKDCP78527 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKDCP78527 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.9■□□□□ 0.14
PRKDCP78527 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.9■□□□□ 0.14
PRKDCP78527 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKDCP78527 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKDCP78527 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKDCP78527 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
PRKDCP78527 AL512625.2-201ENST00000417533 625 ntBASIC15.89■□□□□ 0.13
PRKDCP78527 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKDCP78527 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKDCP78527 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKDCP78527 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 AL161729.1-201ENST00000604104 1402 ntBASIC15.89■□□□□ 0.13
PRKDCP78527 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKDCP78527 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKDCP78527 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKDCP78527 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKDCP78527 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKDCP78527 AC233263.1-201ENST00000578059 224 ntBASIC15.88■□□□□ 0.13
PRKDCP78527 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKDCP78527 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKDCP78527 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
PRKDCP78527 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC15.88■□□□□ 0.13
PRKDCP78527 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKDCP78527 FP325331.1-202ENST00000623531 1380 ntBASIC15.88■□□□□ 0.13
PRKDCP78527 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms