Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NR1H2P55055 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NR1H2P55055 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NR1H2P55055 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.37■□□□□ 0.85
NR1H2P55055 AL391422.3-201ENST00000603791 2761 ntBASIC20.36■□□□□ 0.85
NR1H2P55055 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
NR1H2P55055 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
NR1H2P55055 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 AC010997.5-201ENST00000609182 354 ntBASIC20.36■□□□□ 0.85
NR1H2P55055 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NR1H2P55055 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
NR1H2P55055 MIR935-201ENST00000401179 91 ntBASIC20.35■□□□□ 0.85
NR1H2P55055 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.35■□□□□ 0.85
NR1H2P55055 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.35■□□□□ 0.85
NR1H2P55055 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NR1H2P55055 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NR1H2P55055 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.34■□□□□ 0.85
NR1H2P55055 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NR1H2P55055 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.34■□□□□ 0.85
NR1H2P55055 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NR1H2P55055 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NR1H2P55055 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NR1H2P55055 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.34■□□□□ 0.85
NR1H2P55055 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NR1H2P55055 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NR1H2P55055 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
NR1H2P55055 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NR1H2P55055 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.33■□□□□ 0.85
NR1H2P55055 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.33■□□□□ 0.85
NR1H2P55055 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.33■□□□□ 0.85
NR1H2P55055 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.33■□□□□ 0.85
NR1H2P55055 MIR6724-1-201ENST00000616420 92 ntBASIC20.33■□□□□ 0.85
NR1H2P55055 MIR6724-2-201ENST00000616483 92 ntBASIC20.33■□□□□ 0.85
NR1H2P55055 MIR6724-4-201ENST00000617390 92 ntBASIC20.33■□□□□ 0.85
NR1H2P55055 MIR6724-3-201ENST00000622482 92 ntBASIC20.33■□□□□ 0.85
NR1H2P55055 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.33■□□□□ 0.84
NR1H2P55055 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NR1H2P55055 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.32■□□□□ 0.84
NR1H2P55055 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.32■□□□□ 0.84
NR1H2P55055 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
NR1H2P55055 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.32■□□□□ 0.84
NR1H2P55055 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.32■□□□□ 0.84
NR1H2P55055 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.32■□□□□ 0.84
NR1H2P55055 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.32■□□□□ 0.84
NR1H2P55055 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.32■□□□□ 0.84
NR1H2P55055 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NR1H2P55055 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NR1H2P55055 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.31■□□□□ 0.84
NR1H2P55055 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
NR1H2P55055 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.31■□□□□ 0.84
NR1H2P55055 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.31■□□□□ 0.84
NR1H2P55055 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
NR1H2P55055 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NR1H2P55055 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.31■□□□□ 0.84
NR1H2P55055 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NR1H2P55055 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.3■□□□□ 0.84
NR1H2P55055 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
NR1H2P55055 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.3■□□□□ 0.84
NR1H2P55055 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.3■□□□□ 0.84
NR1H2P55055 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.3■□□□□ 0.84
NR1H2P55055 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NR1H2P55055 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NR1H2P55055 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NR1H2P55055 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NR1H2P55055 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
NR1H2P55055 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.29■□□□□ 0.84
NR1H2P55055 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.29■□□□□ 0.84
NR1H2P55055 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.29■□□□□ 0.84
NR1H2P55055 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.29■□□□□ 0.84
NR1H2P55055 AL356740.2-201ENST00000601559 647 ntBASIC20.29■□□□□ 0.84
NR1H2P55055 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.29■□□□□ 0.84
NR1H2P55055 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NR1H2P55055 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NR1H2P55055 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NR1H2P55055 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
NR1H2P55055 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NR1H2P55055 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms