Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HMGCS2P54868 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.16■■□□□ 1.62
HMGCS2P54868 AC005181.1-201ENST00000604782 1256 ntBASIC25.16■■□□□ 1.62
HMGCS2P54868 MYCNOS-205ENST00000641950 531 ntBASIC25.16■■□□□ 1.62
HMGCS2P54868 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.15■■□□□ 1.62
HMGCS2P54868 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC25.15■■□□□ 1.62
HMGCS2P54868 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 AC092068.2-201ENST00000590491 1708 ntBASIC25.15■■□□□ 1.62
HMGCS2P54868 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 TSPY6P-201ENST00000448518 926 ntBASIC25.15■■□□□ 1.62
HMGCS2P54868 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGCS2P54868 BRI3-207ENST00000539286 699 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGCS2P54868 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
HMGCS2P54868 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGCS2P54868 LINC01960-201ENST00000563759 1884 ntBASIC25.15■■□□□ 1.62
HMGCS2P54868 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGCS2P54868 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGCS2P54868 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.14■■□□□ 1.62
HMGCS2P54868 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC25.14■■□□□ 1.62
HMGCS2P54868 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.14■■□□□ 1.62
HMGCS2P54868 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC25.14■■□□□ 1.62
HMGCS2P54868 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.14■■□□□ 1.61
HMGCS2P54868 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGCS2P54868 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HMGCS2P54868 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.13■■□□□ 1.61
HMGCS2P54868 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGCS2P54868 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.13■■□□□ 1.61
HMGCS2P54868 GUSBP6-202ENST00000438529 1198 ntBASIC25.13■■□□□ 1.61
HMGCS2P54868 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.13■■□□□ 1.61
HMGCS2P54868 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HMGCS2P54868 CD99P1-205ENST00000527459 561 ntBASIC25.13■■□□□ 1.61
HMGCS2P54868 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.13■■□□□ 1.61
HMGCS2P54868 AC079089.2-201ENST00000531211 1277 ntBASIC25.13■■□□□ 1.61
HMGCS2P54868 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
HMGCS2P54868 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC25.13■■□□□ 1.61
HMGCS2P54868 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HMGCS2P54868 TFG-210ENST00000620299 1289 ntTSL 5 BASIC25.13■■□□□ 1.61
HMGCS2P54868 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.12■■□□□ 1.61
HMGCS2P54868 METTL15-202ENST00000403099 795 ntTSL 5 BASIC25.12■■□□□ 1.61
HMGCS2P54868 SLC7A5P2-201ENST00000553010 536 ntBASIC25.12■■□□□ 1.61
HMGCS2P54868 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC25.12■■□□□ 1.61
HMGCS2P54868 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.12■■□□□ 1.61
HMGCS2P54868 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGCS2P54868 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGCS2P54868 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.11■■□□□ 1.61
HMGCS2P54868 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGCS2P54868 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC25.11■■□□□ 1.61
HMGCS2P54868 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.11■■□□□ 1.61
HMGCS2P54868 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC25.11■■□□□ 1.61
HMGCS2P54868 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC25.11■■□□□ 1.61
HMGCS2P54868 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.11■■□□□ 1.61
HMGCS2P54868 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.61
HMGCS2P54868 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.1■■□□□ 1.61
HMGCS2P54868 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.1■■□□□ 1.61
HMGCS2P54868 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC25.1■■□□□ 1.61
HMGCS2P54868 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.1■■□□□ 1.61
HMGCS2P54868 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
HMGCS2P54868 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HMGCS2P54868 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HMGCS2P54868 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGCS2P54868 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGCS2P54868 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC25.09■■□□□ 1.61
HMGCS2P54868 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
HMGCS2P54868 OAS3-207ENST00000551007 998 ntTSL 2 BASIC25.09■■□□□ 1.61
HMGCS2P54868 AL138781.1-201ENST00000566567 1274 ntBASIC25.09■■□□□ 1.61
HMGCS2P54868 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
HMGCS2P54868 AP004607.7-201ENST00000527152 1677 ntBASIC25.09■■□□□ 1.61
HMGCS2P54868 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGCS2P54868 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.09■■□□□ 1.61
HMGCS2P54868 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
HMGCS2P54868 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC25.08■■□□□ 1.61
HMGCS2P54868 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGCS2P54868 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.08■■□□□ 1.61
HMGCS2P54868 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
HMGCS2P54868 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.07■■□□□ 1.6
HMGCS2P54868 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.07■■□□□ 1.6
HMGCS2P54868 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms