Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
TNFRSF4P43489 AP004607.7-201ENST00000527152 1677 ntBASIC21.9■■□□□ 1.1
TNFRSF4P43489 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.9■■□□□ 1.1
TNFRSF4P43489 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TNFRSF4P43489 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TNFRSF4P43489 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TNFRSF4P43489 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TNFRSF4P43489 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TNFRSF4P43489 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.89■■□□□ 1.1
TNFRSF4P43489 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TNFRSF4P43489 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TNFRSF4P43489 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 DUX4L16-201ENST00000555130 1264 ntBASIC21.89■■□□□ 1.09
TNFRSF4P43489 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 UBE2DNL-204ENST00000602536 740 ntBASIC21.89■■□□□ 1.09
TNFRSF4P43489 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.89■■□□□ 1.09
TNFRSF4P43489 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TNFRSF4P43489 OR7E47P-201ENST00000546390 1422 ntBASIC21.89■■□□□ 1.09
TNFRSF4P43489 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 DUSP8P5-201ENST00000422884 1815 ntBASIC21.88■■□□□ 1.09
TNFRSF4P43489 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 AL034346.1-201ENST00000568244 1277 ntBASIC21.88■■□□□ 1.09
TNFRSF4P43489 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.88■■□□□ 1.09
TNFRSF4P43489 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
TNFRSF4P43489 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
TNFRSF4P43489 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TNFRSF4P43489 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TNFRSF4P43489 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.87■■□□□ 1.09
TNFRSF4P43489 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.87■■□□□ 1.09
TNFRSF4P43489 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.87■■□□□ 1.09
TNFRSF4P43489 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.87■■□□□ 1.09
TNFRSF4P43489 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TNFRSF4P43489 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 AC007322.1-201ENST00000426983 750 ntBASIC21.86■■□□□ 1.09
TNFRSF4P43489 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 KRT18P20-201ENST00000548986 1279 ntBASIC21.86■■□□□ 1.09
TNFRSF4P43489 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.86■■□□□ 1.09
TNFRSF4P43489 MYCNOS-205ENST00000641950 531 ntBASIC21.86■■□□□ 1.09
TNFRSF4P43489 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
TNFRSF4P43489 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TNFRSF4P43489 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TNFRSF4P43489 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.85■■□□□ 1.09
TNFRSF4P43489 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TNFRSF4P43489 AL355802.2-201ENST00000402069 882 ntBASIC21.85■■□□□ 1.09
TNFRSF4P43489 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TNFRSF4P43489 AC138907.5-202ENST00000569484 235 ntBASIC21.85■■□□□ 1.09
TNFRSF4P43489 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.85■■□□□ 1.09
TNFRSF4P43489 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.85■■□□□ 1.09
TNFRSF4P43489 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TNFRSF4P43489 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
TNFRSF4P43489 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.84■■□□□ 1.09
TNFRSF4P43489 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.84■■□□□ 1.09
TNFRSF4P43489 AL121832.2-201ENST00000610979 668 ntBASIC21.84■■□□□ 1.09
TNFRSF4P43489 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.84■■□□□ 1.09
TNFRSF4P43489 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.84■■□□□ 1.09
TNFRSF4P43489 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TNFRSF4P43489 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TNFRSF4P43489 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TNFRSF4P43489 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.83■■□□□ 1.09
TNFRSF4P43489 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.83■■□□□ 1.09
TNFRSF4P43489 AC010141.2-201ENST00000452426 721 ntBASIC21.83■■□□□ 1.09
TNFRSF4P43489 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TNFRSF4P43489 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.83■■□□□ 1.09
TNFRSF4P43489 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TNFRSF4P43489 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TNFRSF4P43489 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TNFRSF4P43489 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 LINC00526-201ENST00000581067 1875 ntBASIC21.82■■□□□ 1.08
TNFRSF4P43489 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms