Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC1P18887 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
XRCC1P18887 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
XRCC1P18887 AP005435.1-201ENST00000529293 1178 ntBASIC21.51■■□□□ 1.03
XRCC1P18887 RARRES2P6-201ENST00000567333 442 ntBASIC21.51■■□□□ 1.03
XRCC1P18887 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC1P18887 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.51■■□□□ 1.03
XRCC1P18887 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
XRCC1P18887 TSPY26P-201ENST00000476365 1326 ntBASIC21.51■■□□□ 1.03
XRCC1P18887 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC1P18887 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.51■■□□□ 1.03
XRCC1P18887 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC1P18887 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC1P18887 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
XRCC1P18887 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
XRCC1P18887 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
XRCC1P18887 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.5■■□□□ 1.03
XRCC1P18887 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
XRCC1P18887 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.5■■□□□ 1.03
XRCC1P18887 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
XRCC1P18887 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.49■■□□□ 1.03
XRCC1P18887 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
XRCC1P18887 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC1P18887 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
XRCC1P18887 AC004687.1-201ENST00000579003 1625 ntBASIC21.48■■□□□ 1.03
XRCC1P18887 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC1P18887 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC1P18887 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC1P18887 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
XRCC1P18887 AC026271.2-201ENST00000428091 497 ntBASIC21.48■■□□□ 1.03
XRCC1P18887 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC1P18887 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
XRCC1P18887 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC1P18887 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.48■■□□□ 1.03
XRCC1P18887 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.48■■□□□ 1.03
XRCC1P18887 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC1P18887 ESRRAP2-201ENST00000418437 1549 ntBASIC21.47■■□□□ 1.03
XRCC1P18887 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC1P18887 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC1P18887 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC1P18887 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
XRCC1P18887 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
XRCC1P18887 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC1P18887 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
XRCC1P18887 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
XRCC1P18887 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.46■■□□□ 1.03
XRCC1P18887 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
XRCC1P18887 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.03
XRCC1P18887 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.46■■□□□ 1.03
XRCC1P18887 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.46■■□□□ 1.03
XRCC1P18887 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.46■■□□□ 1.03
XRCC1P18887 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.46■■□□□ 1.03
XRCC1P18887 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
XRCC1P18887 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC1P18887 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.46■■□□□ 1.03
XRCC1P18887 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.45■■□□□ 1.02
XRCC1P18887 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 MIR572-201ENST00000384983 95 ntBASIC21.45■■□□□ 1.02
XRCC1P18887 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.45■■□□□ 1.02
XRCC1P18887 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.45■■□□□ 1.02
XRCC1P18887 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.45■■□□□ 1.02
XRCC1P18887 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.45■■□□□ 1.02
XRCC1P18887 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.45■■□□□ 1.02
XRCC1P18887 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
XRCC1P18887 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC1P18887 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC1P18887 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.44■■□□□ 1.02
XRCC1P18887 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
XRCC1P18887 MIR6821-201ENST00000617625 74 ntBASIC21.44■■□□□ 1.02
XRCC1P18887 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.44■■□□□ 1.02
XRCC1P18887 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.44■■□□□ 1.02
XRCC1P18887 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.44■■□□□ 1.02
XRCC1P18887 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC1P18887 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
XRCC1P18887 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
XRCC1P18887 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC1P18887 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.44■■□□□ 1.02
XRCC1P18887 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.44■■□□□ 1.02
XRCC1P18887 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC1P18887 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
XRCC1P18887 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
XRCC1P18887 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
XRCC1P18887 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
XRCC1P18887 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms